RPOB_CALFG
ID RPOB_CALFG Reviewed; 1060 AA.
AC Q7YJX8;
DT 16-JAN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 78.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=PEP {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Plastid-encoded RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
OS Calycanthus floridus var. glaucus (Eastern sweetshrub) (Calycanthus
OS fertilis var. ferax).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Magnoliidae; Laurales; Calycanthaceae;
OC Calycanthus.
OX NCBI_TaxID=212734;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Goremykin V., Hirsch-Ernst K.I., Woelfl S., Hellwig F.H.;
RT "The chloroplast genome of the 'basal' angiosperm Calycanthus fertilis
RT -- structural and phylogenetic analyses.";
RL Plant Syst. Evol. 242:119-135(2003).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: In plastids the minimal PEP RNA polymerase catalytic core is
CC composed of four subunits: alpha, beta, beta', and beta''. When a
CC (nuclear-encoded) sigma factor is associated with the core the
CC holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AJ428413; CAD28713.1; -; Genomic_DNA.
DR RefSeq; NP_862746.2; NC_004993.1.
DR AlphaFoldDB; Q7YJX8; -.
DR SMR; Q7YJX8; -.
DR GeneID; 2598032; -.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 2.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 3.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW Chloroplast; DNA-directed RNA polymerase; Nucleotidyltransferase; Plastid;
KW Transcription; Transferase.
FT CHAIN 1..1060
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000048014"
SQ SEQUENCE 1060 AA; 119316 MW; 4BB014230CD20AA1 CRC64;
MPTIPGFSQI QFEGFCRFID QGLTEELHKF PKIEDTDQEI EFQLFVETYQ LVEPLIKERD
AVYESLTYSS ELYVSAGLIW KTGRDMQEQT IFIGNIPLMN SLGNSIVSGI YRIVINQILQ
SPGIYYRSEL DHNGISVYTG TIISDWGGRP ELEIDRKARI WARVSRKQKI SILVPSSAMG
SNLREILDNV CYPEIFLSFP NDKEKKKIGS RENAILEFYK QFACVGGDPV FSESLCKELQ
KKFFQQRCEL GRIGRRNMNR RLNIDIPQNN TFLLPRDVLA VVDHLIGMKF GMGTLDDMNH
LKNKRIRSVA DLLQDQFGLA LVRLENAVRG TICGAIRHKL IPTPHNLVTS TPLTTTYESF
FGLHPLSQVL DRTNPLTQIV HGRKSSYLGP GGLTGRTASF RIRDIHPSHY GRICPIDTSE
GINVGLIGSL AIHARIGHWG SIESPFYEIS EKSKEIVYLP PSRDEYYMVA AGNSLALNRG
IQEEQVVPAR YRQEFLTIAW EQIHLRSIFP FQYFSIGASL IPFIEHNDAN RALMSSNMQR
QAVPLSRSEK CIVGTGLEGQ AALDSGVSAI AEHEGKIIYT DTDKIVLSGN RDTISIPLVM
YQRSNKNTCM HQKPRVPRGK CIKKGQILAD GAATVGGELA LGKNVLVAHM PWEGYNSEDA
VLISERLIYG DIYTSFHIRK YEIQTHVTSQ GPERITNEIP HLEAHLLRNL DKNGIVMLGS
WIERGDILVG KLTPQAAKES SYAPEDRLLR AILGIQVSTA KETCLKLPIG GRGRVIDVRW
IQKKGGSSYN PETIRVSILQ KREIKVGDKV AGRHGNKGIV SKILPRQDMP YLQDGTPVDM
VFNPLGVPSR MNVGQMFECS LGLAGYLLDK HYRIAPFDER YEQEASRKLV FPELYSASKQ
TVNPWVFEPE YPGKSRIFDG RTGDPFEQPV IIGKSYILKL IHQVDDKIHG RSSGHYALVT
QQPLRGRAKQ GGQRVGEMEV WALEGFGVAH ISQEMLTYKS DHIRARQEVL GATIIGGTIP
KPEDAPESFR LLVRELRSLA LELNHFLVSE KNFQINRKEA