RPOB_CHAGL
ID RPOB_CHAGL Reviewed; 1070 AA.
AC Q8MA12;
DT 16-JAN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=PEP {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Plastid-encoded RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
OS Chaetosphaeridium globosum (Charophycean green alga) (Herposteiron
OS globosum).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales;
OC Chaetosphaeridiaceae; Chaetosphaeridium.
OX NCBI_TaxID=96477;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=M1311;
RX PubMed=12161560; DOI=10.1073/pnas.162203299;
RA Turmel M., Otis C., Lemieux C.;
RT "The chloroplast and mitochondrial genome sequences of the charophyte
RT Chaetosphaeridium globosum: insights into the timing of the events that
RT restructured organelle DNAs within the green algal lineage that led to land
RT plants.";
RL Proc. Natl. Acad. Sci. U.S.A. 99:11275-11280(2002).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: In plastids the minimal PEP RNA polymerase catalytic core is
CC composed of four subunits: alpha, beta, beta', and beta''. When a
CC (nuclear-encoded) sigma factor is associated with the core the
CC holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AF494278; AAM96566.1; -; Genomic_DNA.
DR RefSeq; NP_683774.1; NC_004115.1.
DR AlphaFoldDB; Q8MA12; -.
DR SMR; Q8MA12; -.
DR PRIDE; Q8MA12; -.
DR GeneID; 860722; -.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 3.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW Chloroplast; DNA-directed RNA polymerase; Nucleotidyltransferase; Plastid;
KW Transcription; Transferase.
FT CHAIN 1..1070
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000048015"
SQ SEQUENCE 1070 AA; 121062 MW; 37B1F2D77619314B CRC64;
MTLQTNQTEK FTLPDLGKIQ LQNFYNFLTK IIYKELKAFP KIYDSEHNFE FKIYPEEFFL
VEPILNERES IYKSITYSTE LYVTAELNCI KNQTKQKQKV LLGHIPLITS NGSFIINGIS
RAVVSQILRS PGIYFGSQLD SNSKCIYTAT IISESGSRLK LEIDDRKLIW ARISKKRKVS
AIVLLLSMGI KLSDITRSIE HPAILDNILK KKNVLSNQKD AILEIYKQLF SAGGDPNFSD
NILSELQRTF FQQRCEIGLI GRSNLNKKLG LNIPDEEIFL LPEDILATIN YLIKLSLGIG
SLDDIDHLKN RRVKSISDFL SEQLKNALNK IENTIEQSIK NISKRKRILT PKSLINSGIL
LAFFKDFFGS HPLSQFLDQT NSLTELVHKR RISSLGPGGL TRRTASFHVR DIHPSHYGRI
CPIETSEGMN AGLVASLASN ATINTMGFIE SPFYQLNDSS LFDKPIFLSA REDENFRIAL
GNRLAIDQEI QEKQITPARY KQEFINTPWS LANLRSIFPW QYFSIGASLI PFLEHDDANR
ALMGSNMQRQ AVPLLITERP IVGTGFEANI ARDSGAPLIS NIDGKIQYLD SEFIEILGVD
KKTYKLKLSN YQRSNNNTCI HHRAIVQLNQ WVRKGQILAD GATTIRGELS LGRNILVAYM
PWEGYNFEDA VLISDRLIYD DLYTSIHIQK YELEIKINHQ GQDKITKDIP HIDKYFLRHL
DENGLVTLGS WVEAGDVLIG KLSSQEREDS LKVPEGKLLQ AIFGLQIGNS RDTSLKLPAG
GEGRVIDIQW IFQDEGGIDS NNFVNVYVLQ KRRIQVGDKI AGRHGNKGIV SQILSRHDMP
YLQNGTSIDM VLSPLGVPSR MNVGQILECL LGFAGKFLNK NYRITPFDER YEREASRKLV
LSELHKAKKL TGYPWLLEPE NAGKSRLFDG RTGETFNQPV TVGSAYILKL IHQVDDKIHA
RSTGPYSLVT QQPVRGRSRG GGQRVGEMEV WALEGFGAAY ILQEMLTVKS DHIHSRYDVL
GAIVTGTTIK TPTTTPESFR LLARELRCLG IQINDIEIYH ETLQKKEIEI