RPOB_CHLMU
ID RPOB_CHLMU Reviewed; 1252 AA.
AC P56869;
DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT 30-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 126.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=TC_0589;
OS Chlamydia muridarum (strain MoPn / Nigg).
OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
OC Chlamydia/Chlamydophila group; Chlamydia.
OX NCBI_TaxID=243161;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MoPn / Nigg;
RX PubMed=10684935; DOI=10.1093/nar/28.6.1397;
RA Read T.D., Brunham R.C., Shen C., Gill S.R., Heidelberg J.F., White O.,
RA Hickey E.K., Peterson J.D., Utterback T.R., Berry K.J., Bass S.,
RA Linher K.D., Weidman J.F., Khouri H.M., Craven B., Bowman C., Dodson R.J.,
RA Gwinn M.L., Nelson W.C., DeBoy R.T., Kolonay J.F., McClarty G.,
RA Salzberg S.L., Eisen J.A., Fraser C.M.;
RT "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae
RT AR39.";
RL Nucleic Acids Res. 28:1397-1406(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 385-754.
RC STRAIN=MoPn;
RX PubMed=2211507; DOI=10.1128/jb.172.10.5732-5741.1990;
RA Engel J.N., Pollack J., Malik F., Ganem D.;
RT "Cloning and characterization of RNA polymerase core subunits of Chlamydia
RT trachomatis by using the polymerase chain reaction.";
RL J. Bacteriol. 172:5732-5741(1990).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AE002160; AAF39421.1; -; Genomic_DNA.
DR PIR; G81686; G81686.
DR RefSeq; WP_010230915.1; NZ_CP027217.1.
DR AlphaFoldDB; P56869; -.
DR SMR; P56869; -.
DR STRING; 243161.TC_0589; -.
DR EnsemblBacteria; AAF39421; AAF39421; TC_0589.
DR GeneID; 1245948; -.
DR KEGG; cmu:TC_0589; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_1_0; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000000800; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 2.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Transcription;
KW Transferase.
FT CHAIN 1..1252
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000047879"
FT CONFLICT 407
FT /note="C -> S (in Ref. 2)"
FT /evidence="ECO:0000305"
FT CONFLICT 513..592
FT /note="NIGLITSLSSFAKINEFGFIETPYRVVRDGIVTDEIEYMTADVEEDCVIAQA
FT SAELDEYNMFKDSVCWARYKGEAFEADT -> KLTDQ (in Ref. 2)"
FT /evidence="ECO:0000305"
FT CONFLICT 704..718
FT /note="CINQTPLCSVGDVVT -> M (in Ref. 2)"
FT /evidence="ECO:0000305"
FT CONFLICT 747
FT /note="W -> Q (in Ref. 2)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 1252 AA; 139965 MW; 81536837E31F4AD9 CRC64;
MFKCPERVSI KKKEDILDLP NLVEVQIKSY KQFLQIGKLA EERENIGLEE VFREIFPIKS
YNEATILEYL SYNLGVPKYS PEECIRRGIT YSVTLKVRFR LTDETGIKEE EVYMGTIPIM
TDKGTFIING AERVVVSQVH RSPGINFEQE KHSKGNVLFS FRIIPYRGSW LEASFDINDL
IYIHIDRKKR RRKILAMTFI RALGYSTDAD IIEEFFAVEE HSLRSEKDFV ALVGKVLADN
VVDADSSLVY GKAGEKLSTA MLKRILDAGV QSLKIAVGAD ENHPIIKMLA KDPTDSYEAA
LKDFYRRLRP GEPATLANAR STIMRLFFDS KRYNLGRVGR YKLNKKLGFP LDDETLSQVT
LRKEDVIGAL KYLIRLRMGD EKTSIDDIDH LANRRVRSVG ELIQNHCRSG LARMEKIVRE
RMNLFDFSSD TLTPGKIISA KGLVSVLKDF FSRSQLSQFM DQTNPVAELT HKRRLSALGP
GGLNRERAGF EVRDVHSSHY GRICPIETPE GPNIGLITSL SSFAKINEFG FIETPYRVVR
DGIVTDEIEY MTADVEEDCV IAQASAELDE YNMFKDSVCW ARYKGEAFEA DTSTVTHMDV
SPKQLVSVVT GLIPFLEHDD ANRALMGSNM QRQAVPLLKT EAAIVGTGLE GRAAKDSGAI
VVAQEDGVVE YVDSYEIVVA KKNNPTLKDT YPLKKFLRSN SGTCINQTPL CSVGDVVTHG
DVLADGPATD KGELALGKNV LVAFMPWYGY NFEDAIIISE KLIKQDAYTS IYIEEFELTA
RDTKLGKEEI TRDIPNVSEE VLANLGEDGI VRIGAEVKPG DILVGKITPK SETELAPEER
LLRAIFGEKA ADVKDASLTV PPGTEGVVMD VKVFSRKDRL SKSDDELVEE AVHLKDLQKE
YKSQLAQLKM EHREKLGALL LNEKAPAAII HRRSADILVQ EGAVFDQETI ELLERESLVD
LLMAPCDMYD VLKDILSNYE TAVQRLEVNY KTEAEHIKEG DADLDHGVIR QVKVYVASKR
KLQVGDKMAG RHGNKGVVSK IVPEADMPFL ANGETVQMIL NPLGVPSRMN LGQVLETHLG
YAAKTAGIYV KTPVFEGFPE SRIWDMMIEQ GLPEDGKSYL FDGKTGERFD SKVVVGYIYM
LKLSHLIADK IHARSIGPYS LVTQQPLGGK AQMGGQRFGE MEVWALEAYG VAHMLQEILT
VKSDDVSGRT RIYESIVKGE NLLRSGTPES FNVLIKEMQG LGLDVRPMVV DA