RPOB_CHRSD
ID RPOB_CHRSD Reviewed; 1358 AA.
AC Q1R0I2;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 16-MAY-2006, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=Csal_0414;
OS Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 /
OS NCIMB 13768 / 1H11).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
OC Halomonadaceae; Chromohalobacter.
OX NCBI_TaxID=290398;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11;
RX PubMed=22675587; DOI=10.4056/sigs.2285059;
RA Copeland A., O'Connor K., Lucas S., Lapidus A., Berry K.W., Detter J.C.,
RA Del Rio T.G., Hammon N., Dalin E., Tice H., Pitluck S., Bruce D.,
RA Goodwin L., Han C., Tapia R., Saunders E., Schmutz J., Brettin T.,
RA Larimer F., Land M., Hauser L., Vargas C., Nieto J.J., Kyrpides N.C.,
RA Ivanova N., Goker M., Klenk H.P., Csonka L.N., Woyke T.;
RT "Complete genome sequence of the halophilic and highly halotolerant
RT Chromohalobacter salexigens type strain (1H11(T)).";
RL Stand. Genomic Sci. 5:379-388(2011).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; CP000285; ABE57776.1; -; Genomic_DNA.
DR RefSeq; WP_011505722.1; NC_007963.1.
DR AlphaFoldDB; Q1R0I2; -.
DR SMR; Q1R0I2; -.
DR STRING; 290398.Csal_0414; -.
DR PRIDE; Q1R0I2; -.
DR EnsemblBacteria; ABE57776; ABE57776; Csal_0414.
DR KEGG; csa:Csal_0414; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_0_6; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000000239; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1358
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000300299"
SQ SEQUENCE 1358 AA; 151639 MW; 017A9F0F8E3F8223 CRC64;
MAYSYTEKKR IRKDFGKLPQ VMDVPYLLAI QLDSYFDFLQ QDRAIEERLD VGLHAAFKSV
FPIESFSGNA ALEYVSYRFG TPAFDVKECQ LRGVTYSAPL RVKVRLIIYD KDSSTKAIKD
IKEQEVYMGE IPLMTENGTF VVNGTERVIV SQLHRSPGVF FDHDKGKSHS SGKLLYSARI
IPYRGSWLDF EFDPKDNVYV RIDRRRKLPA TVLLRALGMS AEEILETFFD TSTFHIEKSG
FSVELVPSRL RGETATFDIK DGEGNLIVEE GRRITQKHIR QMEKAGLERL DVPMEYLFGK
TLAKDQVDPN TGELVCECNT EITPELLEKI GQAGITTLET LYTNDLDTGP FVSDTLKIDT
THSQLEALVE IYRMMRPGEP PTKEAAETLF HNLFFTEDRY DLSGVGRMKF NRRLRREGDT
GSGVLDNQDI LDVMRELINI RNGFGEVDDI DHLGNRRIRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAVKEF FGSSQLSQFM DQNNPLSEVT HKRRVSALGP
GGLTRERAGF EVRDVHATHY GRLCPIETLE GPNIGLINSL ATYSHTNSYG FLETPYRKVV
DRQVTDEVVH LSAIEEGDFI IAQASATVDE SNKLTDDLVQ VRHKGETTFM APDKVTLMDV
SPRQVVSVAA ALIPFLEHDD ANRALMGSNM QRQAVPTLKA EKPLVGTGME RFVARDSGVC
AVARRGGVID SVDAKRIVVR INEDEIIGGE AGVDIYNLTK YVRSNQNTCM NQRPIVRPGD
VVARGDILAD GPSVDMGDLA LGQNMRMAFM PWNGYNFEDS ILISERVVEE DRFTSIHIQE
LTCVSRDTKL GAEEISSDIP NVGEAALGKL DDAGIVYIGA EVGAGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLRAPTGMK GTVIDVQVFT RDGVEKDSRA LSIEQSQLDE
VRKDLQETYR IAEEATFERL KRALIGQPVN GGPKLKKGDT LDEAYLDELP RSQWFKLRMQ
DESLNELLAQ ADEQLENRRK EMDERFEDKK RKLTQGDDLA PGVLKIVKVY LAVKRRIQSG
DKMAGRHGNK GVISSIMPIE DMPFDDNGEP VDVVLNPLGV PSRMNVGQIL ETHLGMAANG
LGVKIDRMLR DARQQQVAEI RDFLGQVYNT AETRQEDIDS LSDDEIITLA KNLRSGVPVA
TPVFDGAKEH EIKHLLTLAD LPDSGQMTLY DGRTGDAFDR QVTVGYMYML KLNHLVDDKM
HARSTGSYSL VTQQPLGGKA QFGGQRFGEM EVWALEAYGA AYTLQEMLTV KSDDVEGRTK
MYKNIVDGDH SMQAGMPESF NVLVKEIRSL GIDIELEG