RPOB_CLOAB
ID RPOB_CLOAB Reviewed; 1241 AA.
AC Q97EG9;
DT 21-FEB-2002, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2001, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=CA_C3143;
OS Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710
OS / VKM B-1787).
OC Bacteria; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae;
OC Clostridium.
OX NCBI_TaxID=272562;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787;
RX PubMed=11466286; DOI=10.1128/jb.183.16.4823-4838.2001;
RA Noelling J., Breton G., Omelchenko M.V., Makarova K.S., Zeng Q., Gibson R.,
RA Lee H.M., Dubois J., Qiu D., Hitti J., Wolf Y.I., Tatusov R.L., Sabathe F.,
RA Doucette-Stamm L.A., Soucaille P., Daly M.J., Bennett G.N., Koonin E.V.,
RA Smith D.R.;
RT "Genome sequence and comparative analysis of the solvent-producing
RT bacterium Clostridium acetobutylicum.";
RL J. Bacteriol. 183:4823-4838(2001).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AE001437; AAK81081.1; -; Genomic_DNA.
DR PIR; F97286; F97286.
DR RefSeq; NP_349741.1; NC_003030.1.
DR RefSeq; WP_010966421.1; NC_003030.1.
DR AlphaFoldDB; Q97EG9; -.
DR SMR; Q97EG9; -.
DR STRING; 272562.CA_C3143; -.
DR PRIDE; Q97EG9; -.
DR EnsemblBacteria; AAK81081; AAK81081; CA_C3143.
DR GeneID; 44999629; -.
DR KEGG; cac:CA_C3143; -.
DR PATRIC; fig|272562.8.peg.3324; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_1_9; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000000814; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1241
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000047884"
FT REGION 1195..1219
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1241 AA; 139249 MW; DEA50BA38EC4CB78 CRC64;
MIHPVQVGKR TRMSFSKLDE IGVMPNLIEV QLDSYQWFLD NGLQEIFDDI NPIQDYTGNL
ILEFIGYKLD MDNIKYSVEE CKERDTTYAA PLKVKVRLLN KETGEVKEQE VFMGDFPLMT
EQGTFIINGA ERVIVSQLVR SPGAYYDYIV DKNGKKLFSA TVIPNRGAWL EYETDSNSVI
HVRIDKTRKL PITILVRAMG FGSDAEIVNY FGEEERLKAT IEKDNTKTRE EALLEIYKRL
RPGEPPTVDS AFSLINSLFF DPKRYDLSRV GRYKFNKKLA VSIRIANKTA AKDIVNPETG
EIIVEKGQRI SKEKALEIQN SGINSVDISV DDNIIRVIGN NFVDIKSYIK FDISDLNIRE
LVYYPVLKEI LENYTDEEAI KEQLKKNVHK LVPKHIIKDD MFATVSYELG LAYGIGNVDD
IDHLGNRRVR SVGELLQNQF RIGLSRMERV VKERMTIQDQ EVITPQALIN IRPVAASIKE
FFGSSQLSQF MDQINPLSEL THKRRLSALG PGGLSRERAG FEVRDVHHSH YGRMCPIETP
EGPNIGLINS LATYAKVNEY GFVETPYRTV DKEQGRVTDE IHYITADEED RCLIARANEA
LDENGYFIDK KITVRAPDEV LVVPANEVDL MDVSARQMVS VATAMIPFLE NDDASRALMG
SNMQRQAVPL LKPQAPVVGT GIEHKAAVDS GILPKARNAG VVEYVSANEV RVRRDSDGGV
DTYRLLKFKR SNQGTCINQR PIVEKNEKVE KGTVLADGQS TDLGEIALGR NIRMGFITWE
GYNYEDAMLI SEQLVRDDVF TSIHIEEYEA EARDTKLGPE EITRDIPNVG EDALKDIDER
GIIRIGAEVR SGDILVGKVT PKGETELTAE ERLLRAIFGE KAREVRDTSL RVPHGEAGII
VDVKIFTREN GDELPPGVNE LVRCYIAQKR KISVGDKMSG RHGNKGVISR VLPEEDMPFL
PDGRPLQICL NPLGVPSRMN IGQVLEVHLG WAAANLGWHI ATPVFDGALE PEIVECLKRA
GYAEDGKTVL YDGRTGEAFD NRVTVGYMYI LKLAHLVDDK IHARSTGPYS LVTQQPLGGK
AQFGGQRFGE MEVWALEAYG AAHTLQEILT VKSDDVVGRV KTYEAIVKGE NIPEPGIPEA
FKVLIKELQA LCLDVKVLSD NNNEIELKES IEDETEDLDV NIEGNEDSKV EPIRPQDVQE
NVSGENVDAG YENEDVDIDY EDLDIDDLKN GLGLEDFNDE H