RPOB_CLOBB
ID RPOB_CLOBB Reviewed; 1249 AA.
AC B2TIG8;
DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 1.
DT 03-AUG-2022, entry version 82.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=CLL_A0231;
OS Clostridium botulinum (strain Eklund 17B / Type B).
OC Bacteria; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae;
OC Clostridium.
OX NCBI_TaxID=935198;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Eklund 17B / Type B;
RA Brinkac L.M., Brown J.L., Bruce D., Detter C., Munk C., Smith L.A.,
RA Smith T.J., Sutton G., Brettin T.S.;
RT "Complete sequence of Clostridium botulinum strain Eklund.";
RL Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; CP001056; ACD21931.1; -; Genomic_DNA.
DR RefSeq; WP_012422821.1; NC_018648.1.
DR AlphaFoldDB; B2TIG8; -.
DR SMR; B2TIG8; -.
DR PRIDE; B2TIG8; -.
DR EnsemblBacteria; ACD21931; ACD21931; CLL_A0231.
DR KEGG; cbk:CLL_A0231; -.
DR PATRIC; fig|935198.13.peg.205; -.
DR HOGENOM; CLU_000524_4_1_9; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000001195; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Transcription;
KW Transferase.
FT CHAIN 1..1249
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_1000141678"
SQ SEQUENCE 1249 AA; 140671 MW; 38B31AA097643AA3 CRC64;
MVHPVQVGKR TRMSFGKVKD VTEMPNLIEV QLDSYQWFLR EGLHEVFEDI NPITNFTGNL
VLEFVDYKLD MDNIKYSVEE CKERDATYAA PLKVSVRLQN NETGEIKEQE VFMGDFPLMT
EQGTFIINGA ERVIVSQLVR SPGVYYNYSI DKTGKKLYSA TVIPNRGAWL EYETDSNDII
YVRIDKTRKL PITILARAMG FGSDQELLDF FGEDERFRAS IEKDNTKTRE EGLLEIYKRL
RPGEPPTVDS AISLIDSLFF DAKRYDLSRV GRYKFNKKLA LNLRIANQIA AMDVINPSTG
EIMVEKGQKI SRLLAEDIQN AGIKSVDILV DDKLVRVISN NFVDITKQVP FDVSDLQIKE
LVHYPTLREI LDNYSDETTI KEEIKKNLSR LIPKHIIKDD IFATISYELG LPYGIGYVDD
IDHLGNRRLR SVGELLQNQF RIGLSRMERV VKERMTIQDQ ESITPQMLIN IRPVAAAIKE
FFGSSQLSQF MDQTNPLSEL THKRRLSALG PGGLSRERAG FEVRDVHHSH YGRMCPIETP
EGPNIGLINS LATFARVNEY GFIETPYRIV DKENARATEE IRYFTADEED QCLIAQAKEP
LDENGYFVDK KVTVRYLEDV LVVPATDVDL MDVSARQIVS VATAMIPFLE NDDASRALMG
SNMQRQAVPL LKPQAPIVGT GIEFKAAVDS GVLPKARNAG VVTFVSANEI RVKRDSDGGT
DNYRLLKFKR SNQSSCINQR PIVNKGEIVF KNQVLADGPS TDLGEIALGK NIRMGFITWE
GYNYEDAMLI SEELVREDVF TSMHIEEYEC EARDTKLGPE EITRDIPNVS EDALKDIDDR
GIIRIGAEVR SGDILVGKVT PKGETELTAE ERLLRAIFGE KAREVRDTSL RVPHGEAGII
VDIKVFTREN GDELNPGVNE LVRCYIVQKR KISVGDKMAG RHGNKGVISR ILPEEDMPFL
PDGRPLQICL NPLGVPSRMN IGQVLEVHLG WAASKLGWHI STPVFDGATE NEIEECLEKA
GYNANGKTVL YDGRTGEPFD NLVTVGIMYI LKLAHLVDDK IHARSTGPYS LVTQQPLGGK
AQFGGQRFGE MEVWALEAYG AAHTLQEILT VKSDDVVGRV KTYEAIVKGE NIPEPGVPES
FKVLIKELQA LCLDVKVLNE NHQEVSLKEY TDDEIADLEV NIEGSEESVP VVPVVESNIE
EVEVEVEVEV ETETEDGYRE DLDEIEYDEN FEIETLETDL ELDDFNDEH