RPOB_CYCTA
ID RPOB_CYCTA Reviewed; 1072 AA.
AC A6H5F9;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 24-JUL-2007, sequence version 1.
DT 03-AUG-2022, entry version 56.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=PEP {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Plastid-encoded RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
OS Cycas taitungensis (Prince sago) (Cycas taiwaniana).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Cycadidae; Cycadales; Cycadaceae; Cycas.
OX NCBI_TaxID=54799;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=17383970; DOI=10.1093/molbev/msm059;
RA Wu C.-S., Wang Y.-N., Liu S.-M., Chaw S.-M.;
RT "Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding
RT genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of
RT extant seed plants.";
RL Mol. Biol. Evol. 24:1366-1379(2007).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: In plastids the minimal PEP RNA polymerase catalytic core is
CC composed of four subunits: alpha, beta, beta', and beta''. When a
CC (nuclear-encoded) sigma factor is associated with the core the
CC holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AP009339; BAF64925.1; -; Genomic_DNA.
DR RefSeq; YP_001312184.1; NC_009618.1.
DR AlphaFoldDB; A6H5F9; -.
DR SMR; A6H5F9; -.
DR PRIDE; A6H5F9; -.
DR GeneID; 5309613; -.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 3.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
PE 3: Inferred from homology;
KW Chloroplast; DNA-directed RNA polymerase; Nucleotidyltransferase; Plastid;
KW Transcription; Transferase.
FT CHAIN 1..1072
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000300439"
SQ SEQUENCE 1072 AA; 120437 MW; 6461C9CB817B8739 CRC64;
MLLDENKGTS TIPEFGKIQF EGFCRFIDQG LIEELQNFPK IEDTDQEIES QLFGNKYELA
EPLIKERNAV YQSLTYSSEL YVPARLIQRN SRKIQKQTVL IGNLPLMNSQ GTFVVNGISR
IVVNQILRSP GIYYSSEPDQ SGITLYTSTI ISDWGGRSKL EIDGKTRIWA RVSKKRKISI
PILLSAMGSN LGEILDNVCY PKIFLSLLTE RQEQKEYLRS KKNAILEFYK KLYCVSGDLV
FSESLCKELR KKFLQQRCEL GKIGRRNPNQ KLNLDIPENE IFSLPQDVLA AVDYSIRVKF
GMGTLDDMDH LKNRRIRSVA DLLQNQFGLA LGRLENAVRR TIRRATKRKC LPTPNNLVTS
TPLTTTFQDF FGSHPLSQFL DQTNPLTEIV HRRKLSYLGP GGLTGRTASS RIRDIHPSHY
GRICPIETSE GMNAGLVASL AIRARIGHCG SLQSPFHKIS ERSEEEHMVY LSSGEDEYYR
IATGNYLALN QGIREEQVTP ARYRQEFLAI AWEQIHFRSI FPFQYFSVGV SLIPFLEHND
ANRALMGSNM QRQAVPLFQP EKCIVGTGLE GQAAPDSGSA AIATQGGRIT YIDAGKITSS
VDGDTVGTEL VTYQRSNNNT CMHQKPRVRR GEYVKKGQIL ADGAATVGGE LSLGKNILVA
HMPWEGYNFE DAILISERLV YEDIYTSFHI ERYGIVTCMT SQGPERITKE IPHLDAHLLR
HLDGNGLVML GSWVETGDVL VGKLTPQPAE ESLRAPEGRL LQAIFGIQVS SARESCLRVP
IGGRGRVIDV RWIHKEENFG DNAEVVHVYI FQKRKIQVGD KVAGRLGNKG IISKILPRQD
MPYLQDGTSV DMVLNPLGVL SRMNVGQIFE CLPGLAGNLM NRHYRITPFD ERYEREASRK
PVFPELYGAS EQTANPWVFE PNHPGKNRLI DGRTGDTLEQ PVTTGKAYMP KLIHQVDDKI
HARSSGPYAL VTQQPLRGKS KRGGQRVGEM EVWALEGFGV AYILQEMLTL KSDHIGARHE
VLGAIITGGP IPRPGTAPES FRLLVRELRS LAPELDHAII YENDFQIDRK EV