RPOB_DEHM1
ID RPOB_DEHM1 Reviewed; 1272 AA.
AC Q3Z8V4;
DT 21-FEB-2006, integrated into UniProtKB/Swiss-Prot.
DT 27-SEP-2005, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=DET0603;
OS Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195)
OS (Dehalococcoides ethenogenes (strain 195)).
OC Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales;
OC Dehalococcoidaceae; Dehalococcoides.
OX NCBI_TaxID=243164;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-2266 / KCTC 15142 / 195;
RX PubMed=15637277; DOI=10.1126/science.1102226;
RA Seshadri R., Adrian L., Fouts D.E., Eisen J.A., Phillippy A.M., Methe B.A.,
RA Ward N.L., Nelson W.C., DeBoy R.T., Khouri H.M., Kolonay J.F., Dodson R.J.,
RA Daugherty S.C., Brinkac L.M., Sullivan S.A., Madupu R., Nelson K.E.,
RA Kang K.H., Impraim M., Tran K., Robinson J.M., Forberger H.A., Fraser C.M.,
RA Zinder S.H., Heidelberg J.F.;
RT "Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides
RT ethenogenes.";
RL Science 307:105-108(2005).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; CP000027; AAW40097.1; -; Genomic_DNA.
DR RefSeq; WP_010936378.1; NC_002936.3.
DR AlphaFoldDB; Q3Z8V4; -.
DR SMR; Q3Z8V4; -.
DR STRING; 243164.DET0603; -.
DR PRIDE; Q3Z8V4; -.
DR EnsemblBacteria; AAW40097; AAW40097; DET0603.
DR KEGG; det:DET0603; -.
DR PATRIC; fig|243164.10.peg.581; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_3_0; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000008289; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 2.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1272
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000224049"
FT REGION 1250..1272
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1272 AA; 141366 MW; AFBB698CF021FAC8 CRC64;
MVSMLPKADA ATGITRKSYA QLPEVVNVPN LIEMQLQSFV WFQEEGLREL IEEISPIKDF
VGNRLELEFI GYEFREPRLS EYECTQRDQT YSVPLYVKAR LIVKTTGEIK EPFDLFFGDI
PLMTALGTFI TSGTERVVVS QLLRSPGVYF TISDDPATGR PLCHTNLIPS RGAWLEFETS
NRDVISVKID GRRKIPVSTL LRAIGYSDDL DILNLFEVID NDPERHYIQS SIDRDPLIKD
EISALIDIYS RLRPGDPPNA DNARKLINEM FFDPQHYDLG KVGRYKVNRR LELPDREVGD
NRALTREDIV AIIKRIIMVN NGQDTPDDID HLGNRRIRTV GELVQNQFRI GLVRLERVAR
ERMSIVNLEV VTPSALVNIR PVVSAVKEFF GGSQLSQFMD QTNPLAEITN KRRLSAMGPG
GLSRERAGFD VRDVHYSHYG RICPIETPEG PNIGLIGSLA TYSRINRYGF VETPYRKVYS
KLKNNDKKLV GLKLAAAVSD KDKVLASAGS VVSEENFKLI SKLPECDIQV MPFVSAEVKY
MPADEEDRYI IAQANTRLDE NGYFLDERIE ARLAERYVIE PPEKIDYMDV SPKQIFSVAA
SLIPFLEHDD ANRALMGANM QRQAVPLLRA EAPMVATGME REAARYSGQV IFAKRAGVAA
SVTSEKIIIR TAEGQDDEYL LKKFVRTNQG TCINQHAVIN KGQKIEAGQV LADSSATENG
ELALGQNCVV AFMSWQGFNY EDAIILSERL VREDAFTSIH ITKHELEAHD TKLGGEEITR
DIPNVGEESL RELDEDGIIR IGAEVGPDDI LVGKITPKGE TELSAEEKLL RAIFGEKARE
VKDTSLRMPH GEWGKVINVR VFSRENGDDL PARVNKWVQV WVAQKRKVSV GDKLAGRHGN
KGVISIIAPV EDMPYLPDGT PVDVVLNPIG VPSRMNLGQI LETHLGWAGH LLGFRVATPV
FDGADDTAIE DALARSWLSA KAGATDMSPE NKRPSTDTAK AVEWIKQQGF DGKKVFDERH
PGLAKEVSLK LWLKDMGVDA SSLSGAELEK KAYEVSSQSR LPSPIVGKSV LRDGRTGETF
DQPVTVGNMY ILKLIHLVED KVHARATGPY SLISQQPLGG KAQFGGQRFG EMEVWAMYAY
GTAHNLQEML TIKSDDIAGR AKAYESIVKG EDVIQPGVPE SFKVLVKELQ SLGLAVEVIN
EEVKIAPSEK VAALTEANLP GSEDVSAEIL PETLYAGAED IEDSMMSVID TDDQDLAMSS
NDEEVSENDE RS