RPOB_LEVBA
ID RPOB_LEVBA Reviewed; 1203 AA.
AC Q03PU9;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 14-NOV-2006, sequence version 1.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=LVIS_1698;
OS Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM
OS 1170 / LMG 11437 / NCIMB 947 / NCTC 947) (Lactobacillus brevis).
OC Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
OC Levilactobacillus.
OX NCBI_TaxID=387344;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB
RC 947 / NCTC 947;
RX PubMed=17030793; DOI=10.1073/pnas.0607117103;
RA Makarova K.S., Slesarev A., Wolf Y.I., Sorokin A., Mirkin B., Koonin E.V.,
RA Pavlov A., Pavlova N., Karamychev V., Polouchine N., Shakhova V.,
RA Grigoriev I., Lou Y., Rohksar D., Lucas S., Huang K., Goodstein D.M.,
RA Hawkins T., Plengvidhya V., Welker D., Hughes J., Goh Y., Benson A.,
RA Baldwin K., Lee J.-H., Diaz-Muniz I., Dosti B., Smeianov V., Wechter W.,
RA Barabote R., Lorca G., Altermann E., Barrangou R., Ganesan B., Xie Y.,
RA Rawsthorne H., Tamir D., Parker C., Breidt F., Broadbent J.R., Hutkins R.,
RA O'Sullivan D., Steele J., Unlu G., Saier M.H. Jr., Klaenhammer T.,
RA Richardson P., Kozyavkin S., Weimer B.C., Mills D.A.;
RT "Comparative genomics of the lactic acid bacteria.";
RL Proc. Natl. Acad. Sci. U.S.A. 103:15611-15616(2006).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; CP000416; ABJ64773.1; -; Genomic_DNA.
DR RefSeq; WP_011668507.1; NC_008497.1.
DR AlphaFoldDB; Q03PU9; -.
DR SMR; Q03PU9; -.
DR STRING; 387344.LVIS_1698; -.
DR EnsemblBacteria; ABJ64773; ABJ64773; LVIS_1698.
DR GeneID; 66421584; -.
DR KEGG; lbr:LVIS_1698; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_1_9; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000001652; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.40.270.10; -; 3.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1203
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000300329"
FT REGION 1167..1203
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1203 AA; 134300 MW; 1B8C3059FE668D1F CRC64;
MAGHLVKYGK HRTRRSYSRI KEVLDLPNLI EIQTNSYNWF LDEGLRDMFD DIMPIEDFQG
NLSLEFVDYQ LLEPKYSVDE AREHDANYSA PLHVTLRLTN HETGEIKSQD VFFGDFPLMT
AQGTFIINGA ERVIVSQLVR SPGVYFNEDT DKNGRTVYGA TVIPNRGAWL EFETDAKNVS
YVRIDRTRKI PMTELVRALG FGSDDEILDI LGDNESLMQT LEKDIHKNTD DSRVEESLKD
IYERLRPGEP KTADSSRSLL TARFFDPKRY DMAPVGRYKT NKKLSLKTRL LGLTLAETLA
DPDTGEIIAA KGTVVDKDVM KSLAPFLDQD DFKMVTFQPS DEAVVTEPLK LQIIKVQSPD
DPEQEVPVIG NGNIDIKLKH IRPADIIASM NYFFDLQLGI GNTDDIDHLG NRRIRSVGEL
LQNQFRIGLS RMERVVRERM SIQDAATVTP QQLINIRPVV ASIKEFFGSS QLSQFMDQTN
PLGELTHKRR LSALGPGGLT RDRAGYEVRD VHYTHYGRMC PIETPEGPNI GLINSLSSYA
RVNKYGFIET PYRRVSWDTH KVTDKIDYLT ADEEDNYVVA QANTPLNDDG SFNTDTIMAR
AQSENIETSA DRIDYMDVSP KQVVAVATAC IPFLENDDSN RALMGANMQR QAVPLLNPHA
PLIGTGIEYK AAHDSGVALI SQHDGTVEYV DAREIRVRRE DGALDTYKLM KFRRSNGGKN
YNQRPIVKVG DHVDNDEVLA DGPSMENGEL ALGQNPLVAF MTWQGYNFED AIGINERLVR
DDVYTSIHIE EYESEARDTK LGPEEMTREI PNVGEDALKN LDEDGIIRVG AEVQDGDILV
GKVTPKGVTE LSAEERLLHA IFGEKAREVR DTSLKVPHGG GGIIQDVKIF TRENGDELSP
GVNMMVRVYI AQKRKIQVGD KMSGRHGNKG TVSVVIPEED MPYMPDGTPI DIMLSPMGVP
SRMNIGQVLE LHLGMAARKL GVHMATPVFD GAQDTDIADA VKEAGMAADA KTVLYDGRTG
EPFDKRVAVG VMHYLKLAHM VDDKMHARSI GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL
EAYGAAYTLQ EILTYKSDDV VGRVKTYEAI VKGDPIPKPG VPESFRVLVK ELQSLGLDMK
VLNGDKEEIE LRDMDDEDDD VVNVDALSKY AQQQEEQRKA AAQTDESKTA PATKNESQPN
TQD