RPOB_NEORS
ID RPOB_NEORS Reviewed; 1363 AA.
AC Q93MK8;
DT 16-JAN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 79.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
OS Neorickettsia risticii (Ehrlichia risticii).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
OC Anaplasmataceae; Neorickettsia.
OX NCBI_TaxID=950;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=ATCC VR-986 / Illinois;
RX PubMed=12710612; DOI=10.1099/ijs.0.02411-0;
RA Taillardat-Bisch A.V., Raoult D., Drancourt M.;
RT "RNA polymerase beta-subunit-based phylogeny of Ehrlichia spp., Anaplasma
RT spp., Neorickettsia spp. and Wolbachia pipientis.";
RL Int. J. Syst. Evol. Microbiol. 53:455-458(2003).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AF401089; AAK83925.1; -; Genomic_DNA.
DR AlphaFoldDB; Q93MK8; -.
DR SMR; Q93MK8; -.
DR PRIDE; Q93MK8; -.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 2.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 2.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Transcription;
KW Transferase.
FT CHAIN 1..1363
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000047896"
SQ SEQUENCE 1363 AA; 152512 MW; 9B217508CFB9BCA3 CRC64;
MSEFHRLYFD ELLFDFPDLV KVQKDSYASF VGGGDAVSSI NDIFASVFPV NDGYGRASLE
FVSCRMGEPK HDEYGCVERG ITYSAPLRAI LRLVVFGDET SGEGGEGVST EPAVKDVREQ
EIYMGDIPIM SKNGTFIING VERVVVSQMH RAPGVFFDND KARSISGKLN YIARIIPYRG
SWLDFEFDAK DVLYFRIDKK RKLPVTLLLR ALGLSNKDIF AQFCEVSECR LTKDGKWTVC
FVPERFKGVR LQYDLINAET GELVLAKGNR ISIVLARNLY AKGLRYCYMD LEVMKDMYLA
DDLVSAKGEV LLPHGTRLTK EHVAKLEFLD VDSIKLVELK GNYIFSTVLQ YDCSYEEAML
SIYRVIRPGE IPSIESAEKL FESLFFSPER YDLLNVGRIR LNAKFNLSHD ESLTVLTKED
IFCTVRELAL LQREVGDVDD IDHLGNSALG LRRVRSVGEF MDNQFRIGLV RMAKVIVENM
ATADFDTVMP CEMINSKILG AVIREFFMSS ALSQFMDQTN PLSEITHKRR ISALGPGGLN
RGRAGFEVRD VHTTHYGRIC ATETPEGATI GLINSLAIYA KINKYGFIET PYRYVRDGRV
TDEVTYLSAI DEIKANICQA SVRVDEEGYI LDDLVYCRRN YENVFIPRSE VQFADVSAKQ
IVSVAASLIP FLENDDANRA LMGSNMQRQA VPLIVPEAPL VGTGMEGYVA RGSGAVIVAK
RAGIVQYIDA RNIVVASESK DDFWIDSYTL CKFRKSNHNT CIHQRCVVYQ GQRVKKGDIL
ADGPAIQQGE LALGRNLVVA FLSWRGYNFE DSVVISSNVV RDDLFTSVHL EGFECVVRDT
RLGPEEITRD VSGVAEEFLH CLDEFGIACV GANVEAGDVL VGKVTPKSSS PVTPEEKLLR
AIFGEKAIDV KDSSLYLPPG VSGCVVDVKV LQRRGIEKVG RALLIEKQAI DAEKARRDHE
LAVLTNYIYS LLKEMLVGKV ALNTLAPISK GDLITGEALE KIDRESWWKL SVDEISSIKL
LRQRFVDRFD EINKTYEENF EKIRGDDDLA QGVLMVVKVF VAVKHTLQPG DKMSGRHGNK
GVISRIVPAE DMPYLADGTP VDIILNPLGV PSRMNVGQIL ETHLGWAAYN LGKKISKLLD
EGNYSEVKSL ILEIYKNDRK MMARLKRMTD TEIVEYSRSL RRGVPVAASV FEGPKTDEIE
RLLVLAGKDP SGQEVLYDGV TGEKFDRKVT VGCKYMLKLH HLVNDKIHAR SIGSYSLITQ
QPLGGKSHFG GQRFGEMECW ALQAYGATFA LQEMLTIKSD DVVGRVNVYD SIVRGDNDFY
YGVPESFNVM MNELRALCLN VEFCSDLERK EDFSDLPLAV SGR