RPOB_OENOB
ID RPOB_OENOB Reviewed; 1197 AA.
AC Q04E85;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 14-NOV-2006, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=OEOE_1375;
OS Oenococcus oeni (strain ATCC BAA-331 / PSU-1).
OC Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
OC Oenococcus.
OX NCBI_TaxID=203123;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-331 / PSU-1;
RX PubMed=17030793; DOI=10.1073/pnas.0607117103;
RA Makarova K.S., Slesarev A., Wolf Y.I., Sorokin A., Mirkin B., Koonin E.V.,
RA Pavlov A., Pavlova N., Karamychev V., Polouchine N., Shakhova V.,
RA Grigoriev I., Lou Y., Rohksar D., Lucas S., Huang K., Goodstein D.M.,
RA Hawkins T., Plengvidhya V., Welker D., Hughes J., Goh Y., Benson A.,
RA Baldwin K., Lee J.-H., Diaz-Muniz I., Dosti B., Smeianov V., Wechter W.,
RA Barabote R., Lorca G., Altermann E., Barrangou R., Ganesan B., Xie Y.,
RA Rawsthorne H., Tamir D., Parker C., Breidt F., Broadbent J.R., Hutkins R.,
RA O'Sullivan D., Steele J., Unlu G., Saier M.H. Jr., Klaenhammer T.,
RA Richardson P., Kozyavkin S., Weimer B.C., Mills D.A.;
RT "Comparative genomics of the lactic acid bacteria.";
RL Proc. Natl. Acad. Sci. U.S.A. 103:15611-15616(2006).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; CP000411; ABJ57237.1; -; Genomic_DNA.
DR RefSeq; WP_011677689.1; NC_008528.1.
DR AlphaFoldDB; Q04E85; -.
DR SMR; Q04E85; -.
DR STRING; 203123.OEOE_1375; -.
DR PRIDE; Q04E85; -.
DR EnsemblBacteria; ABJ57237; ABJ57237; OEOE_1375.
DR KEGG; ooe:OEOE_1375; -.
DR PATRIC; fig|203123.7.peg.1389; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_1_9; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000000774; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 2.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 2.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1197
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000300361"
FT REGION 581..603
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1172..1197
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1197 AA; 133225 MW; 1A261C6CF446C480 CRC64;
MVTHNVKINK HVTRRSYSSA KEVLEIPPLT EVQTASYKWF MDKGIKEMFN DIMPIEDFAG
KLSLEYVDYS LGEPKYSLKE SREQAVNYAA PLHVTLRLTN KETGEIKSQD VYFGEFPLMT
EYGSFVINGA ERVVVSQLVR SPGIYYNEDT DKTGRVVYGT TVIPNRGAWL ELDTDAKGVA
NIRIDRTRKL PITELIRSFG FGSDSEIQDI FGDEIDSLNL AIEKDVHKDP SMSRVGEALE
DIYERLRPGE PKTIDSSRSL LAARFFDPKR YDLGNVGRYK VNKKLSLKSR LLGQTLAEDI
LNSDGEVVVP KDTKIDKKSM KLISPLLDEE DFHVENLQPD EEGVLPDPIK VQTIKIFSQV
DPTKVIKLIG NGHIDESIHH ILPADIIAGM NYFFNLQEGV GATDDIDHLG NRRIRSVGEL
LENQFRIGLT RMERVVRERM SIQDSDTVTP QQLINIRPVV AVVKEFFGSS QLSQFMDQTN
PLGELNHKRR LSALGPGGLT RDRAGYEVRD VHYSHYGRID PIETPEGPNI GLITSLAVYG
RINEYGFIET PYRRVDWDTH KVTDKIDYLT ADVEDNYTIA QANSPLNDDG SFTNPTVTAR
HGDNNIETPI EDVDYMDVSP KQVVAVSTAA IPFLENDDSN RALMGANMQR QAVPLVAPHS
PIVGTGIEYR AAVDSGLAQI AEEKGTVEYV DGRTIKVREE DGTLHEYPLM KFQRSNGGKN
YNQTPIVKVG EKIEKGEVLA DGPAMENGEL ALGQNPVIAF MTWHGYNFED AIVLNERLVR
DDVYTSIHIE EHESEARDTK LGPEEITREI PNVGEDQLKD LDDSGIIRIG AEVEDGDILV
GKITPKGVTE LSAEERLLHA IFGEKAREVR DTSLRVPHGG GGIIQDVEIF TRENGDELAP
GVNMMVRVFI AQKRKIQVGD KMAGRHGNKG TVSVVVPEED MPFMPDGRPI DILLSPMGVP
SRMNIGQILE LHLGMAAKKL GIKIMTPVFD GASDDEIIDA LKEAGLDEDG KTVLYDGQTG
EAFDNRISVG VMHYMKLAHM VDDKIHARSI GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL
EAYGAAYTLQ EILTYKSDDV RGRNKVFESI VKGQAIPKPG VPESFRVLVK ELQALGLDMK
VLNGKGQEVK MAQMDEDDNV ATVDALEQIA KEKPDLFKGD DDDTPRIPAT KLDEENV