RPOB_PETMO
ID RPOB_PETMO Reviewed; 1187 AA.
AC A9BF33;
DT 08-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 15-JAN-2008, sequence version 1.
DT 03-AUG-2022, entry version 82.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=Pmob_0355;
OS Petrotoga mobilis (strain DSM 10674 / SJ95).
OC Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Petrotoga.
OX NCBI_TaxID=403833;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 10674 / SJ95;
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA Tice H., Pitluck S., Meincke L., Brettin T., Bruce D., Detter J.C., Han C.,
RA Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.,
RA Mikhailova N., Noll K., Richardson P.;
RT "Complete sequence of Petroga mobilis SJ95.";
RL Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; CP000879; ABX31097.1; -; Genomic_DNA.
DR RefSeq; WP_012208204.1; NC_010003.1.
DR AlphaFoldDB; A9BF33; -.
DR SMR; A9BF33; -.
DR STRING; 403833.Pmob_0355; -.
DR PRIDE; A9BF33; -.
DR EnsemblBacteria; ABX31097; ABX31097; Pmob_0355.
DR KEGG; pmo:Pmob_0355; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_3_0; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000000789; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Transcription;
KW Transferase.
FT CHAIN 1..1187
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000329185"
SQ SEQUENCE 1187 AA; 134956 MW; A48214DDE5AC86A8 CRC64;
MNTVVREVGR RERKFFGKVP EKTEIYEDLV KIQKDSFRDF LDKKIMESIK RYMPIKIPVK
ASGKKNKEFL IDFVDVKFED SSFSENECRD KGLTYAGKAY LKVRITDSAT GEMIEKDDIF
LCNIPYMTER GIFIVNGAER VIVNQLVRSP GVYFIKEEET DTSKEMFIAH FLPIKGAWLE
ILYNPNPGKE VLQVRIDRKR KFNFFLFLRA LGYENDLDIL RLFPKEIDLD DEVELSNYNN
CTVLSDLSFQ ELDDMDPPRK STYGMKLYEV LELLKKYEIK SVTVAHLVAE ITLEKMKKRY
EKEERLTSLE AYKEIFSKLK PTEIPRAQKA KEEIEDMYFN PEKFDFSQIG RQKIQVKLRK
AYIDYLREVE KKDISEDMED KIKYPIKTFA VDKLDIILSA RYLLHVKENI EGLDTRDHLG
NKRVRSVGEL MQIEFERAFS KMIQHAPEKL AGVQSINKIS PQSLINSRSI MTAFHQFFAS
SQLSQFLDQV NPLAELTHKR RLSAIGPGGL KREHAKFEVR DVHHSHYGRM CPIETPEGAN
IGLITSMAIL AKVDEYGFLK TPYYRVKHAK VDLNNIVYLS ADEEELYRIA PASAEIGEDG
SLVEEYIEAR YLGKVSLFHK DEIEYISVTP KQIASVSAAL IPFLEHDDAN RALMGSNMQR
QAVPLLRPQA PFVGTGVEWL AARDSGYLIM AKHKGIVDYV DGRKIVITRL DEENNVLKDS
NDEPLKDEYT LLKYVRSNQD MCINQVPIVN VGDVVTKGQA IADGPSMDMG ELALGRNIFI
GFLPWEGYNF EDAIVVSQEL LENDAFTSIH IEVFETKAMD TQLGPEEITA DIPNVKKELL
RNLDEEGIVK IGSYVSSGDI LVGKVTPRGE SDTTPEEKLI KSVFGDKGRD IKDSSLTVPH
GIEGRVIDVQ IFDRKDIPSL EIGVNKYVKV FIATKKTLQV GDKLAGRHGN KGVISTILNK
EDMPFLPDGT PLQMLLSPLG VPSRMNIGQV LELHLGWLSM LTNDYYATPI FDGATESEIM
DELSKVREEH ELYLGDDPDQ PNGKIVLRDG RTGEPFDFPV AVGSMYMLKL SHIAKDKIHA
RSTGPYSLIH QQPLGGKAHF GGQRFGEMEV WALEAHGAAH TLNEMLTYKS DDIKGRNEVY
KAILKGENLP EPGIPESFKV LTKELQGLML DIKLYDEDGN ELDVDRL