RPOB_PINKO
ID RPOB_PINKO Reviewed; 1075 AA.
AC Q85X54;
DT 16-JAN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 77.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=PEP {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Plastid-encoded RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
OS Pinus koraiensis (Korean pine).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Pinopsida; Pinidae; Conifers I; Pinales; Pinaceae; Pinus;
OC Pinus subgen. Strobus.
OX NCBI_TaxID=88728;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KangWon16;
RA Noh E.W., Lee J.S., Choi Y.I., Han M.S., Yi Y.S., Han S.U.;
RT "Complete nucleotide sequence of Pinus koraiensis.";
RL Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: In plastids the minimal PEP RNA polymerase catalytic core is
CC composed of four subunits: alpha, beta, beta', and beta''. When a
CC (nuclear-encoded) sigma factor is associated with the core the
CC holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AY228468; AAO74009.1; -; Genomic_DNA.
DR RefSeq; NP_817162.1; NC_004677.2.
DR AlphaFoldDB; Q85X54; -.
DR SMR; Q85X54; -.
DR PRIDE; Q85X54; -.
DR GeneID; 806901; -.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 3.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW Chloroplast; DNA-directed RNA polymerase; Nucleotidyltransferase; Plastid;
KW Transcription; Transferase.
FT CHAIN 1..1075
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000048040"
FT REGION 966..986
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1075 AA; 122369 MW; D45B1ABAF671A118 CRC64;
MRLDENEGAF TIPEFGKIQF EGFCRFIDQG LMEELHNFPK IEDTDKEIEF SLFGNEYELA
EPFIKERDAV YQSLTYYSEL YVPARSIRRN SRKIQKQTVF LGNIPLMNSH GTFVVNGIYR
IVVNQILISP GIYYRSELDH NRINYIYTGT LISDWGRRSK LEIDVGERIW ARVSRKRKIS
IPVLLSAMGL NLEEILDNTH YPKRFLFLLK KKERWEREEY LWSREKAILE FYKKLYCVSG
DLVFSESLCK ELQEKFFRQR CELGKIGRRN LNQKLNLDIP ENEIFSLPQD VLAAVDYLIG
VKFGMGTLDD IDHLRNRRIR SVADLLQNQF RLTLGHLEDT VRRTIHGATK RRSTPQNLVT
STLFKNTFQD FFGSHPLSQF LDQTNPLTEI AHGRKLSHLG PGGLTGRTAS FRTRDIHPSY
YGRICPIDTS EGMNAGLVSS LSIHAKIGDC GSLQSPFYKI SERSREEHMV YLLPGEDEDE
YYRIATGNSL ALNQGIQEEQ ITPARYRQEF IVIAWEQIHF RSIFPFQYFS VGVSLIPFLE
HNDANRALMG SNMQRQAVPL FRPEKCIAGT GLEGQAALDS GSVAIATQEG RIEYIDAVNI
TSSINGDTVR TESVIYQRSN TNTCTHQKPQ VRQGECVKKG QILADGATTV GGELSLGKNV
LVAYMPWEGY NFEDAILISE RLVYEDIYTS FHIVRYRIEI CMTSQGPERI TREIPHLDAH
SLRHLDENGL VMLGSWIETG DVLVGKLTPQ TTEESLCTPE GRLLQTIFGI EVSTARESCL
RAPIGGKGRV IDVRWINRVD DSGDNAETVH VYISQKRKIQ VGDKVAGRHG NKGIISIILP
RQDMPYLQNG IPVDMVLNPL GVPSRMNVGQ IFECLPGLAG NLMNKHYRIT PFDEKYEREA
SRKLVFPELY KASEQTANPW VFEPDHPGKH RLIDGRTGAV FEQPVTIGKA YMSKLSHQVD
EKIHARSSGP YARVTQQPLR GKSKRGGQRI GEMEVWALEG FGVAYILQEM LTLKSDHIRT
RNEVLGAIIT GGPIPKPDTA PESFRLLIRE LRSLALELNH AIISEKDFQI DREEV