RPOB_PORCN
ID RPOB_PORCN Reviewed; 1270 AA.
AC Q9F3X8;
DT 16-JAN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 86.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
OS Porphyromonas cangingivalis.
OC Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae;
OC Porphyromonas.
OX NCBI_TaxID=36874;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=ATCC 700135 / JCM 15983 / NCTC 12856 / VPB 4874;
RX PubMed=12361249; DOI=10.1099/00207713-52-5-1477;
RA Morse R., O'Hanlon K., Collins M.D.;
RT "Phylogenetic, amino acid content and indel analyses of the beta subunit of
RT DNA-dependent RNA polymerase of Gram-positive and Gram-negative bacteria.";
RL Int. J. Syst. Evol. Microbiol. 52:1477-1484(2002).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; Y16470; CAC10563.1; -; Genomic_DNA.
DR AlphaFoldDB; Q9F3X8; -.
DR SMR; Q9F3X8; -.
DR STRING; 36874.HQ34_00335; -.
DR eggNOG; COG0085; Bacteria.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.40.270.10; -; 3.
DR Gene3D; 2.40.50.150; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Transcription;
KW Transferase.
FT CHAIN 1..1270
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000047935"
SQ SEQUENCE 1270 AA; 142623 MW; 0B07E9144FB9E3C4 CRC64;
MSSHNPTQRV NFASIKNPME YADFLDVQLK SFKDFLQLDT PPEKRKKEGL YKVFAENFPI
HDTRNNFVLE FLDYYIDPPR YTLDECISRG LTYNVPLKAK MKLYCTDPEH EDFETVIQDV
YLGPIPYMTE SGTFIINGAE RVVVSQMHRS PGVFFSESVH PNGTKLFSAR IIPFKGSWIE
FATDINNVMY AYIDRKKKLP VTTLLRAIGF ETDKDILNLF GIAEEVKVSK STLKKYYGRK
IAARVLNSWI EDLVDEETGE VVSMERYDVI VDRDELLTED NVDQIIESGA KNILITKDDS
ELGLDYSVTT NTLQKDPSNS EKEAVYHIYK QLRNQDPVDD ASAREVINSL FFSEKRYDLG
DVGRYRINKK LGINIDEETK VLTTEDITAI IAHLVELMNS KQVVDDIDHL SNRRVRTVGE
QLYNQFGIGL ARMARTVRER MNVRDNEVFT PIDLINAKTI SSVVNSFFGT NALSQFMDRT
NPLAEITHKR RLSSLGPGGL SRDRAGFEVR DVHYTHYGRL CPIETPEGPN IGLISSLCVY
AKINDLGFIS TPYRKVVDGK VDFSENGVEY YTAEAEDDKT VAQGNAPLDE NGKFIKDAVY
ARYGSDFPVV SPSEIDLMDV SPIQIASIAA SLIPFLEHDD ANRALMGSNM MRQAVPLIHS
DAPIVGTGVE QKLVHDSRTQ IVAEGAGTVE FVDASVIKIR YDRSEDDTFV SFEDNLKIYN
LPKFRKTNQS TTIDLRPICR KGDRVEKGDI LTEGYSTENG ELALGRNVQV AYMPWKGYNY
EDAIVLNERM VREDIFTSVH VDEYILEVRE TKRGLEELTS DIPNVSEEAT KDLDDRGIIR
VGARVHPGDI LIGKITPKGE SDPTPEEKLL HAIFGDKAGD VKDASLKANP SLSGVVIKTH
LFSKAMHSKK DKGGVREIVK KLDEEMEEKL AELRELMLKK LIQLTDNKLS NGIRNFEDTE
IVPKGVKLTP AVCSKIEFGE VAIFNWTGDE HTDELVAKLI SNYLRKAKEI ESEYRRKKFD
ATIGDELPNG IIQIAKVLIA KKRKIQVGDK MAGRHGNKGI VSKIVRQEDM PFMEDGTPMD
LCLNPLGVPS RMNLGQIFEL SSMGSRRLDV KFATPIFDGA SLDDLDQWTD KAGIPRYGKT
YLYDGGTGEQ FDQPATVGVT YFLKLGHMVD DKMHARSIGP YSLITQQPLG GKAQFGGQRF
GEMEVWALEA YGAAHVLQEM LTIKSDDVVG RSKAYEAIVK GAPMPTPGIP ESLNVLLHEL
KGLGLSFCME