RPOB_PORPU
ID RPOB_PORPU Reviewed; 1143 AA.
AC P51252;
DT 01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-1996, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=PEP {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Plastid-encoded RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
OS Porphyra purpurea (Red seaweed) (Ulva purpurea).
OG Plastid; Chloroplast.
OC Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra.
OX NCBI_TaxID=2787;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Avonport;
RA Reith M.E., Munholland J.;
RT "Complete nucleotide sequence of the Porphyra purpurea chloroplast
RT genome.";
RL Plant Mol. Biol. Rep. 13:333-335(1995).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: In plastids the minimal PEP RNA polymerase catalytic core is
CC composed of four subunits: alpha, beta, beta', and beta''. When a
CC (nuclear-encoded) sigma factor is associated with the core the
CC holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; U38804; AAC08138.1; -; Genomic_DNA.
DR PIR; S73173; S73173.
DR RefSeq; NP_053862.1; NC_000925.1.
DR AlphaFoldDB; P51252; -.
DR SMR; P51252; -.
DR GeneID; 809881; -.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW Chloroplast; DNA-directed RNA polymerase; Nucleotidyltransferase; Plastid;
KW Transcription; Transferase.
FT CHAIN 1..1143
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000048042"
SQ SEQUENCE 1143 AA; 129058 MW; 407E43E7061F3FC7 CRC64;
MVQRISLKNK LLPDLVEIQR DSFKWFLLEG LTEVLEFFPN ISDPTSRLEL QLFGKEYKIK
FPRYSVRQAK SRDRTYSAQI YVPAKLTRKD IDLPSKDQNK TIKSLDLSSN HLQFSAEKQI
KNKKYKKRLV FIGDLPIMTN RGTFIVSGTE RVIINQIIRS PGIYYKQDID KNGKQIYSAS
LISNRGSWLK FEIDPKGEIW IRIDKTHKVN AYIFLRAIGL NKNEIQKGLS KYAFLISASQ
SYSVKELAKE IGKNDIEEVT DEEALLIVYS KLRPNEPATV PVAKQMLYSR FFDPKRYDLG
EVGRYKINKK LGLNIPKTFR VLSPQDILSS IDYLINIKDK NSGNLDDIDH LGNRRVRSVG
ELLQNQFRVG LNRLERIIRE RMMICDIDSL SLSNLINPKP LIASVREFFG SSQLSQFMDQ
TNPVAELTHK RRISALGPGG FNKDRAGFAV RDLHPSHYGR ICPIETPEGP NAGLIGSLAT
CARVNIFGFI ETPFYPVHNG QVDYSNNPIY LTADEEDDFR VAPGDVKVNV QNYIEGDIIP
VRYRQEFVTT IPNQVDYIAI SPIQVISAAT SLIPFLEHDD ANRALMGSNM QRQAVPLLYP
EKPIIGTGLE TKIARDSGMV VISRTSGCVN YVSANKIGIQ DNNGRTVLYR LKKYYRSNQD
TCINQRPIVW VGEKIVVGQT LADGASTDCG EIALGRNILV AYMPWEGYNY EDAFLISERL
VYEDVYTSIH IEKYEVECRQ TKLGPEEITR EIPNVSDHSL KDLDRNGIVV CGSWVEAGDI
LVGKITPKGE ADQLPEGKLL RAIFGEKARD VRDTSLRLPN AAKGRVVNVR VFTRQKGDEL
PPGTNAMIRV YVAQKRKIQV GDKMAGRHGN KGIISRILPK QDMPYLCDGT PVDIVLNPLG
VPSRMNVGQV FECLLGLAGG YLDKRFKIIP FDEMYGAEAS RALVNRKLQE ASILTKNKWI
FNDQHPGKMQ VFDGRTGEPF DNPVTIGRAY MLKLVHLVDD KIHARSTGPY SLVTQQPLGG
RAQHGGQRLG EMEVWALEAF GAAYTLQELL TVKSDDMQAR NEALNAIVKG KPIPKPGTPE
SFKVLMRELQ SLGLDIAVHK LKLFENGQRR TVEVDLMSDS KEDRVARSNY EVLPVDDFEQ
FLY