RPOB_PSEPU
ID RPOB_PSEPU Reviewed; 1357 AA.
AC P19175;
DT 01-NOV-1990, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-1992, sequence version 2.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
OS Pseudomonas putida (Arthrobacter siderocapsulatus).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=303;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Borodin A.M., Danilkovich A.V., Allikmets R.L., Rostapshov V.M.,
RA Chernov I.P., Azhikina T.L., Monastyrskaya S., Sverdlov D.;
RT "Nucleotide sequence of the rpoB gene coding for the beta-subunit of RNA
RT polymerase in Pseudomonas putida.";
RL Dokl. Biochem. 302:1261-1265(1988).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1036-1357.
RX PubMed=3219133;
RA Borodin A.M., Danilkovich A.V., Chernov I.P., Azhykina T.L.,
RA Rostapshov V.M., Monastyrskaya G.S.;
RT "Genes coding for RNA polymerase in bacteria. III. The use of modified
RT Sanger's method for sequencing the C-terminal region of rpoB gene, N-
RT terminal region of rpoC gene and intercistron region of RNA polymerase in
RT Pseudomonas putida.";
RL Bioorg. Khim. 14:1179-1182(1988).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; X15849; CAA33846.1; -; Genomic_DNA.
DR EMBL; M38319; AAA25986.1; -; Genomic_DNA.
DR PIR; JN0419; JN0419.
DR AlphaFoldDB; P19175; -.
DR SMR; P19175; -.
DR STRING; 1240350.AMZE01000092_gene671; -.
DR PRIDE; P19175; -.
DR eggNOG; COG0085; Bacteria.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 2.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 2.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Transcription;
KW Transferase.
FT CHAIN 1..1357
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000047942"
FT CONFLICT 1180
FT /note="T -> N (in Ref. 2; AAA25986)"
FT /evidence="ECO:0000305"
FT CONFLICT 1184
FT /note="I -> V (in Ref. 2; AAA25986)"
FT /evidence="ECO:0000305"
FT CONFLICT 1236
FT /note="F -> S (in Ref. 2; AAA25986)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 1357 AA; 151306 MW; 4AEDB68C8B086EA6 CRC64;
MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGSIQGSLPR RRLHAAFKSV
FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD KESSNKAIKD
IKEQEVYMGE IPLMTENGTF VINGTERVIV SQMHRSPGVF FDHDRGKTHS SGKLLYSARI
IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYS TEEVLNTFYT TNVFHISGEK
LSLELVPQRL AGEVAVMDIH DETGKVIVEQ GRRITARHIN QLEKAGVKQL DVPMEYVLGR
TTAKAIVHPA TGEILAECNT EMTTELLIKV AKAQVVRIET LYTNDIDCGP FISDTLKIDT
TSNQLEALVE IYRMMRPGEP PTKDAAETLF NNLFFSAERY DLSPLGRMKF NRRIGRTEIE
GSGVLSKEDI VEVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAVKEF FGSSQLSQFM DQNNPLSEIT HKRRCSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL AAYARTNQYG FLESPYRVVK
EGVVSDDIVF LSAIEEADHV IAQASAAMND KKQLIDELVA VRHLNEFTVK APEDVTLMDV
SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC
VVRRRGGVID SVDASRIVVR VADDEVETGE RRVDIYNLTK YTRSNQNTCI NQRPLVSKGD
KVQRGDIMAD RASTDMGELA LGQNMRIAFM AWNGFNFEDS ICLSERVVQE DRFTTIHIQE
LTCVARDNKL GPREITSGIP NVGEAALNKL DEAGIVYVGA EVGAGDILVG KVTPKGHTQL
TPEEKLLRAI FGEKASDVKD TSLRVPTGTQ GTVIDVQVFT RDGVERDSRA LAIEKMQLDE
IPQDLNEEFR IVEGATFERL RSALNGQVVD GGAGLKKGTV ITDEVLDGLD DGQWFKLRMA
EDALNEQLEK AQQYIVDRRR LLDDKFEDKK RNVQQGDDLA PGVLKIVKVY LAIRRRIQPG
DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDVVLNPLGV PSRMNVGQIL ETHLGLAAKG
LGEKIDRMLE EQRKAAELRV FLTEVYNEIG GRQENLDEFT DEEILALANN LKKGVPMATP
VFDGAKEREI KAMLKLADLP ESGQMVLFDG RTRNKFERPV TVGYMYMLKL NHLVDDKMHA
RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY
KNIVDGDHRM EPGMAESFNV LIKEIRSLGI DIDLETE