RPOB_SORC5
ID RPOB_SORC5 Reviewed; 1378 AA.
AC A9GRB1;
DT 20-MAY-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-FEB-2008, sequence version 1.
DT 03-AUG-2022, entry version 78.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=sce0410;
OS Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So
OS ce56)).
OC Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae;
OC Polyangiaceae; Sorangium.
OX NCBI_TaxID=448385;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=So ce56;
RX PubMed=17965706; DOI=10.1038/nbt1354;
RA Schneiker S., Perlova O., Kaiser O., Gerth K., Alici A., Altmeyer M.O.,
RA Bartels D., Bekel T., Beyer S., Bode E., Bode H.B., Bolten C.J.,
RA Choudhuri J.V., Doss S., Elnakady Y.A., Frank B., Gaigalat L., Goesmann A.,
RA Groeger C., Gross F., Jelsbak L., Jelsbak L., Kalinowski J., Kegler C.,
RA Knauber T., Konietzny S., Kopp M., Krause L., Krug D., Linke B., Mahmud T.,
RA Martinez-Arias R., McHardy A.C., Merai M., Meyer F., Mormann S.,
RA Munoz-Dorado J., Perez J., Pradella S., Rachid S., Raddatz G., Rosenau F.,
RA Rueckert C., Sasse F., Scharfe M., Schuster S.C., Suen G.,
RA Treuner-Lange A., Velicer G.J., Vorholter F.-J., Weissman K.J., Welch R.D.,
RA Wenzel S.C., Whitworth D.E., Wilhelm S., Wittmann C., Bloecker H.,
RA Puehler A., Mueller R.;
RT "Complete genome sequence of the myxobacterium Sorangium cellulosum.";
RL Nat. Biotechnol. 25:1281-1289(2007).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AM746676; CAN90567.1; -; Genomic_DNA.
DR RefSeq; WP_012233045.1; NC_010162.1.
DR AlphaFoldDB; A9GRB1; -.
DR SMR; A9GRB1; -.
DR STRING; 448385.sce0410; -.
DR PRIDE; A9GRB1; -.
DR EnsemblBacteria; CAN90567; CAN90567; sce0410.
DR KEGG; scl:sce0410; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_0_7; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR BioCyc; SCEL448385:SCE_RS02160-MON; -.
DR Proteomes; UP000002139; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1378
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_1000086383"
SQ SEQUENCE 1378 AA; 155046 MW; ACD6B806924BAD95 CRC64;
MPSVVQSNFR VRKNLGRVRR IIDVPNLIDI QKSSYDKFLQ MSVPPNEREE VGLQAVFRSV
FPIKDFNGTS ELVFVSYNLE PPKYDVDECR QRGMTYSAPI KVTNQLMIYD TRDGGERIVR
DIKEQEVYFG ELPLMTETGT FIINGTERVV VSQLHRSPGV FFDHDKGKTH SSGKLLYSAR
VIPYRGSWLD FEFDPKDIIY VRIDRRRKMH ATVLLRALGY STQDLLNYFY STETVYLEKG
GKYAKSIEYD LLAGQRTTRD IKIGNDVIVK KNTKFTRAAI RKMKEAKLER LSLEPEELVG
KVAAHDIVDP ETGEVVVEVN EELTEAKLER LRDANIEQFR ILFIDGLNVG SYLRDTLLTD
KVKTMEDSIL EIYRRLRPGD PPTLETAKTL FHNLFFNAER YDLSKVGRLK LNYKFYRDVP
EDERPGLDLT VLTPQDILET VRHLIELKNG RGSVDDIDHL GNRRVRAVGE LMENQYRIGL
VRMERAIKER MSMSQEIDTL MPHDLINAKP VSAVVKEYFG SSQLSQFMDQ TNPLSEVTHK
RRLSALGPGG LTRERAGFEV RDVHATHYGR ICPIETPEGP NIGLIASLST FARVNEFGFV
ETPYRKVENG RVTEDVIWLS ALEEEGKYIA QATVNLDEGG RFKESLVSAR YNGEFKIVTP
EMVELMDVAP NQMVSVAAAL VPFLEHDDAN RALMGANMQR QAVPLVQSHA PLVGTGMEER
LARDSGVCVI ARRPGVVESV DATRIVVRAE GEGAEVPDIY HLMKFQRSNQ STCYTQKPVV
RTGEVVKKGD VLADGPSTDM GELALGQNVL VAFMPWQGYN FEDSILVSER IAKDDVFTSI
HIEEFECVAR DTKLGKEEIT RDIPNVGEEA LKDLDDSGIV RIGAEVRPGD ILVGKITPKG
ETQLSPEEKL LRAIFGEKAG DVRDSSLKVP PGVGGIVINA RVFSRKGTEK DDRARDIEDQ
ERARIERTRD EEIKILRDSF FRRIRELLLG KEATGKLVDD KGKVLFQKGA IIDEPSLAEI
PRKYWGEIPV DDAERVQQIL RDLEELVRTR EEHFRDKIDR LSKGDELPPG VIKMVKVYIA
IKRKLQVGDK MAGRHGNKGV ISRILPEEDM PYLQDGRPVD LVLNPLGVPS RMNVGQILEI
HLGWGAFELG NQLQRMIEQQ RASAEIKEHL KAIYAGDETM NGFFDNLDDG DVKRFVKTVD
EGVFMGSPVF DGAHESDIKG ALDLAGLPTS GQAILFDGRT GDAFDQNVTV GIMYMLKLHH
LVDDKIHARS IGPYSLVTQQ PLGGKAQFGG QRLGEMEVWA MEAYGAAYAL QEFLTVKSDD
VMGRTRMYEA IVKGDYTLEA GLPESFNVLI KELQSLCLNV ELVETSAGVE ASAAEEEE