RPOB_STRAW
ID RPOB_STRAW Reviewed; 1161 AA.
AC Q82DQ5;
DT 16-JAN-2004, integrated into UniProtKB/Swiss-Prot.
DT 11-SEP-2007, sequence version 2.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=SAV_4914;
OS Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC
OS 14893 / NCIMB 12804 / NRRL 8165 / MA-4680).
OC Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae;
OC Streptomyces.
OX NCBI_TaxID=227882;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL
RC 8165 / MA-4680;
RX PubMed=11572948; DOI=10.1073/pnas.211433198;
RA Omura S., Ikeda H., Ishikawa J., Hanamoto A., Takahashi C., Shinose M.,
RA Takahashi Y., Horikawa H., Nakazawa H., Osonoe T., Kikuchi H., Shiba T.,
RA Sakaki Y., Hattori M.;
RT "Genome sequence of an industrial microorganism Streptomyces avermitilis:
RT deducing the ability of producing secondary metabolites.";
RL Proc. Natl. Acad. Sci. U.S.A. 98:12215-12220(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL
RC 8165 / MA-4680;
RX PubMed=12692562; DOI=10.1038/nbt820;
RA Ikeda H., Ishikawa J., Hanamoto A., Shinose M., Kikuchi H., Shiba T.,
RA Sakaki Y., Hattori M., Omura S.;
RT "Complete genome sequence and comparative analysis of the industrial
RT microorganism Streptomyces avermitilis.";
RL Nat. Biotechnol. 21:526-531(2003).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; BA000030; BAC72626.2; -; Genomic_DNA.
DR RefSeq; WP_037647936.1; NZ_JZJK01000077.1.
DR AlphaFoldDB; Q82DQ5; -.
DR SMR; Q82DQ5; -.
DR STRING; 227882.SAV_4914; -.
DR PRIDE; Q82DQ5; -.
DR EnsemblBacteria; BAC72626; BAC72626; SAVERM_4914.
DR KEGG; sma:SAVERM_4914; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_1_11; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000000428; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1161
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000047971"
SQ SEQUENCE 1161 AA; 128297 MW; 3352070E6955EF22 CRC64;
MAASRTASTA NTNNGASTAP LRISFAKIKE PLEVPNLLAL QTESFDWLLG NDAWKARVEA
ALDSGQDVPT KSGLEEIFEE ISPIEDFSGS MSLTFRDHRF EPPKNSIDEC KDRDFTYAAP
LFVTAEFTNN ETGEIKSQTV FMGDFPLMTN KGTFVINGTE RVVVSQLVRS PGVYFDSSID
KTSDKDIFSA KVIPSRGAWL EMEIDKRDMV GVRIDRKRKQ SVTVLLKALG WTTEQILEEF
GEYESMRATL EKDHTQGQDD ALLDIYRKLR PGEPPTREAA QTLLENLYFN PKRYDLAKVG
RYKVNKKLGG EAPLDAGILT VEDIISSIKY LVKLHAGETE TVGDNGTSIV VETDDIDHFG
NRRLRNVGEL IQNQVRTGLA RMERVVRERM TTQDVEAITP QTLINIRPVV ASIKEFFGTS
QLSQFMDQNN PLSGLTHKRR LSALGPGGLS RERAGFEVRD VHPSHYGRMC PIETPEGPNI
GLIGSLASYG RVNAFGFVET PYRRVTDGVV TDEVDYLTAD EEDRFVIAQA NAPLGDDFRF
EETRVLVRRR GGEVDYVPGD DVDYMDVSPR QMVSVATAMI PFLEHDDANR ALMGANMMRQ
AVPLIKSEAP LVGTGMEYRC AVDAGDVLKS EKDGVVQEVS ADYVTTANDD GTYTTYRLHK
FSRSNQGTSV NQKVVVDEGA RVIAGQVLAD GPATENGEMA LGKNLLVAFM PWEGHNYEDA
IILSQRLVQD DVLSSIHIEE HEVDARDTKL GPEEITRDIP NVSEEVLADL DERGIIRIGA
EVVAGDILVG KVTPKGETEL TPEERLLRAI FGEKAREVRD TSLKVPHGEI GKVIGVRVFD
REEGDELPPG VNQLVRVYVA QKRKITDGDK LAGRHGNKGV ISKILPIEDM PFLEDGTPVD
IILNPLGVPS RMNPGQVLEI HLGWLASRGW DVSGLADDWA QRLQAIEADQ VAPGTNVATP
VFDGAREDEL AGLLQHTIPN RDGERMVLPT GKAPLFDGRS GEPFPEPISV GYMYILKLHH
LVDDKLHARS TGPYSMITQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYAL QELLTIKSDD
VTGRVKVYEA IVKGENIPEP GIPESFKVLI KEMQSLCLNV EVLSSDGMSI EMRDTDEDVF
RAAEELGIDL SRREPSSVEE V