RPOB_STRCO
ID RPOB_STRCO Reviewed; 1161 AA.
AC Q9L0L0;
DT 16-JAN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=SCO4654;
GN ORFNames=SCD82.26;
OS Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145).
OC Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae;
OC Streptomyces; Streptomyces albidoflavus group.
OX NCBI_TaxID=100226;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-471 / A3(2) / M145;
RX PubMed=12000953; DOI=10.1038/417141a;
RA Bentley S.D., Chater K.F., Cerdeno-Tarraga A.-M., Challis G.L.,
RA Thomson N.R., James K.D., Harris D.E., Quail M.A., Kieser H., Harper D.,
RA Bateman A., Brown S., Chandra G., Chen C.W., Collins M., Cronin A.,
RA Fraser A., Goble A., Hidalgo J., Hornsby T., Howarth S., Huang C.-H.,
RA Kieser T., Larke L., Murphy L.D., Oliver K., O'Neil S., Rabbinowitsch E.,
RA Rajandream M.A., Rutherford K.M., Rutter S., Seeger K., Saunders D.,
RA Sharp S., Squares R., Squares S., Taylor K., Warren T., Wietzorrek A.,
RA Woodward J.R., Barrell B.G., Parkhill J., Hopwood D.A.;
RT "Complete genome sequence of the model actinomycete Streptomyces coelicolor
RT A3(2).";
RL Nature 417:141-147(2002).
RN [2]
RP SUBUNIT.
RC STRAIN=ATCC BAA-471 / A3(2) / M145;
RX PubMed=23605043; DOI=10.1093/nar/gkt277;
RA Tabib-Salazar A., Liu B., Doughty P., Lewis R.A., Ghosh S., Parsy M.L.,
RA Simpson P.J., O'Dwyer K., Matthews S.J., Paget M.S.;
RT "The actinobacterial transcription factor RbpA binds to the principal sigma
RT subunit of RNA polymerase.";
RL Nucleic Acids Res. 41:5679-5691(2013).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription. The RNAP
CC complex including the principal sigma factor HrdB also interacts with
CC RNA-binding protein RbpA. {ECO:0000255|HAMAP-Rule:MF_01321,
CC ECO:0000269|PubMed:23605043}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AL939121; CAB77428.1; -; Genomic_DNA.
DR RefSeq; NP_628815.1; NC_003888.3.
DR RefSeq; WP_011029792.1; NZ_VNID01000028.1.
DR AlphaFoldDB; Q9L0L0; -.
DR SMR; Q9L0L0; -.
DR STRING; 100226.SCO4654; -.
DR PRIDE; Q9L0L0; -.
DR GeneID; 1100095; -.
DR KEGG; sco:SCO4654; -.
DR PATRIC; fig|100226.15.peg.4725; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_1_11; -.
DR InParanoid; Q9L0L0; -.
DR OMA; FMTWEGY; -.
DR PhylomeDB; Q9L0L0; -.
DR Proteomes; UP000001973; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 1: Evidence at protein level;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1161
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000047972"
SQ SEQUENCE 1161 AA; 128494 MW; A9C27B928EE191A8 CRC64;
MAASRNASTA NTNNAASTAP LRISFAKIKE PLEVPNLLAL QTESFDWLLG NDAWKARVES
ALESGQDVPT KSGLEEIFEE ISPIEDFSGS MSLTFRDHRF EPPKNSIDEC KDRDFTYAAP
LFVTAEFTNN ETGEIKSQTV FMGDFPLMTN KGTFVINGTE RVVVSQLVRS PGVYFDSSID
KTSDKDIFSA KIIPSRGAWL EMEIDKRDMV GVRIDRKRKQ SVTVLLKALG WTTEQILEEF
GEYESMRATL EKDHTQGQDD ALLDIYRKLR PGEPPTREAA QTLLENLYFN PKRYDLAKVG
RYKVNKKLGA DEPLDAGVLT TDDVIATIKY LVKLHAGETE TVGESGREIV VETDDIDHFG
NRRIRNVGEL IQNQVRTGLA RMERVVRERM TTQDVEAITP QTLINIRPVV ASIKEFFGTS
QLSQFMDQNN PLSGLTHKRR LNALGPGGLS RERAGFEVRD VHPSHYGRMC PIETPEGPNI
GLIGSLASYG RINPFGFIET PYRKVVEGQV TDDVDYLTAD EEDRFVIAQA NAALGDDMRF
AEARVLVRRR GGEVDYVPGD DVDYMDVSPR QMVSVATAMI PFLEHDDANR ALMGANMMRQ
AVPLIKSESP LVGTGMEYRS AADAGDVVKA EKAGVVQEVS ADYITTTNDD GTYITYRLAK
FSRSNQGTSV NQKVIVAEGD RIIEGQVLAD GPATENGEMA LGKNLLVAFM PWEGHNYEDA
IILSQRLVQD DVLSSIHIEE HEVDARDTKL GPEEITRDIP NVSEEVLADL DERGIIRIGA
EVVAGDILVG KVTPKGETEL TPEERLLRAI FGEKAREVRD TSLKVPHGEI GKVIGVRVFD
REEGDELPPG VNQLVRVYVA QKRKITDGDK LAGRHGNKGV ISKINPIEDM PFLEDGTPVD
IILNPLAVPS RMNPGQVLEI HLGWLASRGW DVSGLAEEWA QRLQVIGADK VEPGTNVATP
VFDGAREDEL AGLLQHTIPN RDGERMVLPS GKARLFDGRS GEPFPEPISV GYMYILKLHH
LVDDKLHARS TGPYSMITQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYAL QELLTIKSDD
VTGRVKVYEA IVKGENIPEP GIPESFKVLI KEMQSLCLNV EVLSSDGMSI EMRDTDEDVF
RAAEELGIDL SRREPSSVEE V