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RPOB_XYLF2
ID   RPOB_XYLF2              Reviewed;        1384 AA.
AC   B2IA68;
DT   14-APR-2009, integrated into UniProtKB/Swiss-Prot.
DT   10-JUN-2008, sequence version 1.
DT   03-AUG-2022, entry version 76.
DE   RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE            Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE            EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE   AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE   AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN   Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
GN   OrderedLocusNames=XfasM23_2106;
OS   Xylella fastidiosa (strain M23).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
OC   Xanthomonadaceae; Xylella.
OX   NCBI_TaxID=405441;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=M23;
RX   PubMed=20601474; DOI=10.1128/jb.00651-10;
RA   Chen J., Xie G., Han S., Chertkov O., Sims D., Civerolo E.L.;
RT   "Whole genome sequences of two Xylella fastidiosa strains (M12 and M23)
RT   causing almond leaf scorch disease in California.";
RL   J. Bacteriol. 192:4534-4534(2010).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000255|HAMAP-Rule:MF_01321}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC   -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC       and 1 omega subunit. When a sigma factor is associated with the core
CC       the holoenzyme is formed, which can initiate transcription.
CC       {ECO:0000255|HAMAP-Rule:MF_01321}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC       {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR   EMBL; CP001011; ACB93504.1; -; Genomic_DNA.
DR   RefSeq; WP_004090725.1; NC_010577.1.
DR   AlphaFoldDB; B2IA68; -.
DR   SMR; B2IA68; -.
DR   EnsemblBacteria; ACB93504; ACB93504; XfasM23_2106.
DR   GeneID; 58017519; -.
DR   KEGG; xfn:XfasM23_2106; -.
DR   HOGENOM; CLU_000524_4_0_6; -.
DR   OMA; FMTWEGY; -.
DR   Proteomes; UP000001698; Chromosome.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   CDD; cd00653; RNA_pol_B_RPB2; 1.
DR   Gene3D; 2.30.150.10; -; 1.
DR   Gene3D; 2.40.270.10; -; 2.
DR   Gene3D; 2.40.50.150; -; 1.
DR   Gene3D; 3.90.1110.10; -; 2.
DR   HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR   InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR   InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR   InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR   InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR   InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR   InterPro; IPR010243; RNA_pol_bsu_bac.
DR   InterPro; IPR007121; RNA_pol_bsu_CS.
DR   InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR   InterPro; IPR007642; RNA_pol_Rpb2_2.
DR   InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR   InterPro; IPR007645; RNA_pol_Rpb2_3.
DR   InterPro; IPR007641; RNA_pol_Rpb2_7.
DR   InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR   PANTHER; PTHR20856; PTHR20856; 1.
DR   Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR   Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR   Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR   Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR   Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR   Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR   TIGRFAMs; TIGR02013; rpoB; 1.
DR   PROSITE; PS01166; RNA_POL_BETA; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase; Nucleotidyltransferase; Transcription;
KW   Transferase.
FT   CHAIN           1..1384
FT                   /note="DNA-directed RNA polymerase subunit beta"
FT                   /id="PRO_1000141752"
SQ   SEQUENCE   1384 AA;  154398 MW;  52870F3985098CC1 CRC64;
     MTSYSFTEKK RIRKDFGKHR SILKVPFLLA IQVDSYRAFL QGDVESSQRK DIGLHGALKS
     VFPIVSYSGN AALEYVGYKL GEPMFDEREC RQRGMSYGAP LRVTVRLVIY DRESSTKAVK
     YIKEQEVYLG EIPLMTENGT FIVNGTERVI VSQLHRSPGV FFDHDRGKTH SSGKLLYSAR
     IIPCRGSWLD FEFDPKDALF TRIDRRRKLP VSILLRALGY SNEEILGEFF EINTFHINPD
     EGVQLELVPE RLRGEILSFN LTDGGSVIVE AGKRITARHV KQLEASGISA LAVPDEYLIG
     RILSHDVIDA TTGELLASAN SEVNEDRIIA FRKAGIESVG TLWVNDLDRG AYLSNTLRID
     PTRTQLEAQV EIYRMMRPGE PPTKEAAQNL FHNLFFTFDR YDLSMVGRMK FNRRVGRKEV
     AGEPVLYDKK YFSDRNDEES RRLVSKLGET SDILDVIKGL CEIRNGRGVV DDIDHLGNRR
     VRSVGEMAEN VFRVGLVRVE RAVKERLSMA ESEGLTPQEL INAKPVAAAI KEFFGSSQLS
     QFMDQNNPLS EVTHKRRLSA LGPGGLTRER AGFEVRDVHL SHYGCLCTIE TPEGPNIGLI
     NSLAVFARTN QYGFLETPYR KVVEGRVTDE VEYLSAIEEN QYVIAQANTL TDDNGQLTES
     FVPCRFQGES LLKPPSYVHY MDVSPMQTVS VAAALVPFLE HDDANRALMG ANMQRQAVPT
     LRAQKPLVGT GIERTVARDS GVTVNARRGG VIDQVDAGRI VVKVNESEII GATDAGVDIY
     GLIKYTRSNQ NTCINQRPLV NVGDIVASGD VLADGPSTDI GELALGQNML IAFMPWNGYN
     FEDSILLSER VVEEDRYTTI HIEELTCIAR DTKLGSEEIS ADIPNVSEQA LNRLDESGVV
     YIGAEVRAGD ILVGKVTPKG ESQLTPEEKL LRAIFGEKAS DVKDSSLRVP PGMDGTVIDV
     QVFTRDGIEK DKRAHQIEEY EIKRVKKDFD DQFRILEGAI YARLRSQIVG KVVNSGVDIK
     KGEVITDPYL DGLKKSDWFA LRMKDEVAVE AIDRAQKQIQ AYQKEFDQRF SDKRSKITQG
     DDLAPGVLKM VKVFLAVKRC IQCGDKMAGR HGNKGVISNV VPVEDMPFME DGTPVDIVLN
     PLGVPSRMNI GQILEVHLGW AAKGLGHRIQ RMLEANAAIA DLRKFLNEIY NHDKSLVGER
     VDLSQFSDDE LLNMAKNLTD GVPMASPVFD GASEQEIKRM LDLAELPAGG QTQLYDGHTG
     EPFDRKTTVG YMHYLKLNHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL
     EAYGAAYTLQ EMLTVKSDDV QGRNQMYKNI VDGDHQMVAG MPESFNVLVK EIRSLAINIE
     LEDN
 
 
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