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RPOC_ANAMM
ID   RPOC_ANAMM              Reviewed;        1415 AA.
AC   Q5PBG3;
DT   07-MAR-2006, integrated into UniProtKB/Swiss-Prot.
DT   04-JAN-2005, sequence version 1.
DT   03-AUG-2022, entry version 92.
DE   RecName: Full=DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
DE            Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
DE            EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};
DE   AltName: Full=RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
DE   AltName: Full=Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
GN   Name=rpoC {ECO:0000255|HAMAP-Rule:MF_01322}; OrderedLocusNames=AM263;
OS   Anaplasma marginale (strain St. Maries).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
OC   Anaplasmataceae; Anaplasma.
OX   NCBI_TaxID=234826;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=St. Maries;
RX   PubMed=15618402; DOI=10.1073/pnas.0406656102;
RA   Brayton K.A., Kappmeyer L.S., Herndon D.R., Dark M.J., Tibbals D.L.,
RA   Palmer G.H., McGuire T.C., Knowles D.P. Jr.;
RT   "Complete genome sequencing of Anaplasma marginale reveals that the surface
RT   is skewed to two superfamilies of outer membrane proteins.";
RL   Proc. Natl. Acad. Sci. U.S.A. 102:844-849(2005).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000255|HAMAP-Rule:MF_01322}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01322};
CC   -!- COFACTOR:
CC       Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01322};
CC       Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP-Rule:MF_01322};
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01322};
CC       Note=Binds 2 Zn(2+) ions per subunit. {ECO:0000255|HAMAP-
CC       Rule:MF_01322};
CC   -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC       and 1 omega subunit. When a sigma factor is associated with the core
CC       the holoenzyme is formed, which can initiate transcription.
CC       {ECO:0000255|HAMAP-Rule:MF_01322}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000255|HAMAP-Rule:MF_01322}.
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DR   EMBL; CP000030; AAV86366.1; -; Genomic_DNA.
DR   RefSeq; WP_010263106.1; NZ_AFMU01000046.1.
DR   AlphaFoldDB; Q5PBG3; -.
DR   SMR; Q5PBG3; -.
DR   GeneID; 7398649; -.
DR   KEGG; ama:AM263; -.
DR   PATRIC; fig|320483.3.peg.222; -.
DR   HOGENOM; CLU_000524_3_1_5; -.
DR   OMA; YRNIRVE; -.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   Gene3D; 1.10.132.30; -; 1.
DR   Gene3D; 1.10.274.100; -; 2.
DR   Gene3D; 4.10.860.120; -; 1.
DR   HAMAP; MF_01322; RNApol_bact_RpoC; 1.
DR   InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR012754; DNA-dir_RpoC_beta_prime_bact.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR   InterPro; IPR038120; Rpb1_funnel_sf.
DR   PANTHER; PTHR19376; PTHR19376; 1.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   SMART; SM00663; RPOLA_N; 1.
DR   TIGRFAMs; TIGR02386; rpoC_TIGR; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase; Magnesium; Metal-binding;
KW   Nucleotidyltransferase; Transcription; Transferase; Zinc.
FT   CHAIN           1..1415
FT                   /note="DNA-directed RNA polymerase subunit beta'"
FT                   /id="PRO_0000225505"
FT   BINDING         69
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         71
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         84
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         87
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         461
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         463
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         465
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         805
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         879
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         886
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         889
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
SQ   SEQUENCE   1415 AA;  156718 MW;  84928C421A5BA9EC CRC64;
     MKMLDLYGYT SIAQSFDKIC ISIASPESIR AMSYGEIKDI STTNYRTFKV EKGGLFCPKI
     FGPVNDDECL CGKYRKKRYR GIVCEKCGVE VTSSKVRRER MGHIELVSPV AHVWFLKSLP
     SRIGALLDMP MKSIESILYS GDFVVIDPMT TPFSKGEVIS ESVYNQARDA YGDEGFIALT
     GAEAIRELLV RLDLGAIRAG LRSELESTSS EMKRKKVVKR LRIIENFIAS GNRPEWMILT
     VIPVLPPDLR PLVSLENGRP AVSDLNHHYR TIINRNNRLE KLLKLNPPAI MIRNEKRMLQ
     EAVDGLFDSS RRSYVSSRAG SMGYKKSLSD MLKGKQGRFR QNLLGKRVDY SGRSVIVVGP
     GLKLHQCGLP KKMALELFKP FICSKLKMYG VAPTVKLANK MIQSEKPEVW DVLDEVIREH
     PILLNRAPTL HRLGLQAFDP VLIEGKAIQL HPLVCSAFNA DFDGDQMAVH VPLSLEAQLE
     ARVLMMSTNN ILSPSNGRPI IVPSKDIVLG IYYLTLQRAQ APDQEVMSFG ELSHVEYALH
     EGIVHTSSKI KYRMQRCNSD GTIVSEVVET TPGRLILWQI FPQHKDLTFD LVNQVLTVKE
     ITSIVDLVYR SCGQRETVEF SDKLMCLGFQ YASQSGISFG CKDMIIPDTK AAHVENASEK
     IKEFSIQYQD GLITRSERYN KVVDEWSKCT DLIARDMMKA ISLSDEEGKL NSIYMMANSG
     ARGSASQMKQ LAGMRGLMAK PSGEIIETPI ISNFREGLSV FEYFNSTHGA RKGLADTALK
     TANSGYLTRR LVDVAQDCTV VEYDCKTKDG VVARAVIEGG AVVATLDSVV LGRVAAVDTY
     NPVTEELLLS AGELIDEGKV EKIRVAGLDA VRVRSPLTCE SKKGICSLCY GRDLAVGDLV
     SIGEAVGVIA AQSVGEPGTQ LTMRTFHVGG TAMRGVEVSN LIAVLDAEVK LVNSNVVTDK
     YGNQIVMSRS CEVVLLDSVG NEKMRHSVPY GAKLYVSDGQ PVKMMDKMAE WDPYTIPIIT
     EKTGTIKYVD LIYGVSINEV LDESTGISNR VVIDWKLHLQ GANLRPRLVL LDEDGNIATL
     YNDLEASYFV PIGAVLNVQD GQKVHAGDVI TRIPRESIKT RDITGGLPRV IELFEARRPK
     EHAIVSDVDG YVEFGKDYYR SKRRIFIRPV DKSLPAVEYL VPKGKHTIVN EGDFVHKGDL
     LMDGDPDQHD ILRVLGAEAL ASYMISEIQQ VYRLQGVRID NKHIEVILRQ MLQKVEITDP
     GDTMYLVGEH AGREEVMRLN RKLEEAGKKP VAYVPILQGI TKASLDTNSF ISAASFQETT
     KVLTEAAFSG KEDPLYGLKE NVIVGRLIPA GTGFIMNKVK KLAMLDQSDY ATYYNSELRE
     IMGDLGDELI AEGEAASPGR SGDGYLGNGG GVVDY
 
 
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