ATS3B_ARATH
ID ATS3B_ARATH Reviewed; 190 AA.
AC Q6NPM5; Q680D1; Q9LVB6;
DT 30-NOV-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Embryo-specific protein ATS3B {ECO:0000305};
DE AltName: Full=Protein ARABIDOPSIS THALIANA SEED 3B {ECO:0000305};
DE Flags: Precursor;
GN Name=ATS3B {ECO:0000303|PubMed:26259197};
GN OrderedLocusNames=At5g62200 {ECO:0000312|Araport:AT5G62200};
GN ORFNames=MMI9.3 {ECO:0000312|EMBL:BAA97184.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2003) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, INTERACTION WITH EULS3, AND TISSUE
RP SPECIFICITY.
RX PubMed=26259197; DOI=10.1016/j.plantsci.2015.07.005;
RA Van Hove J., De Jaeger G., De Winne N., Guisez Y., Van Damme E.J.;
RT "The Arabidopsis lectin EULS3 is involved in stomatal closure.";
RL Plant Sci. 238:312-322(2015).
CC -!- FUNCTION: May play a role during embryo development. {ECO:0000305}.
CC -!- SUBUNIT: Interacts with EULS3 (via N-terminus).
CC {ECO:0000269|PubMed:26259197}.
CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, cauline
CC leaves and flowers. {ECO:0000269|PubMed:26259197}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA97184.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB019235; BAA97184.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED97580.1; -; Genomic_DNA.
DR EMBL; BT010895; AAR24673.1; -; mRNA.
DR EMBL; AK175131; BAD42894.1; -; mRNA.
DR EMBL; AK175936; BAD43699.1; -; mRNA.
DR EMBL; AK176035; BAD43798.1; -; mRNA.
DR RefSeq; NP_201026.1; NM_125614.4.
DR AlphaFoldDB; Q6NPM5; -.
DR SMR; Q6NPM5; -.
DR STRING; 3702.AT5G62200.1; -.
DR PaxDb; Q6NPM5; -.
DR PRIDE; Q6NPM5; -.
DR ProteomicsDB; 241011; -.
DR EnsemblPlants; AT5G62200.1; AT5G62200.1; AT5G62200.
DR GeneID; 836341; -.
DR Gramene; AT5G62200.1; AT5G62200.1; AT5G62200.
DR KEGG; ath:AT5G62200; -.
DR Araport; AT5G62200; -.
DR TAIR; locus:2167908; AT5G62200.
DR eggNOG; ENOG502S14I; Eukaryota.
DR HOGENOM; CLU_102727_2_0_1; -.
DR InParanoid; Q6NPM5; -.
DR OMA; SSHRWIG; -.
DR OrthoDB; 1362581at2759; -.
DR PRO; PR:Q6NPM5; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q6NPM5; baseline and differential.
DR GO; GO:0031225; C:anchored component of membrane; TAS:TAIR.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR InterPro; IPR010417; Embryo-specific_ATS3.
DR InterPro; IPR036392; PLAT/LH2_dom_sf.
DR Pfam; PF06232; ATS3; 1.
DR SUPFAM; SSF49723; SSF49723; 1.
PE 1: Evidence at protein level;
KW Glycoprotein; Reference proteome; Secreted; Signal.
FT SIGNAL 1..24
FT /evidence="ECO:0000255"
FT CHAIN 25..190
FT /note="Embryo-specific protein ATS3B"
FT /id="PRO_5008176508"
FT DOMAIN 48..158
FT /note="PLAT"
FT /evidence="ECO:0000305"
FT CARBOHYD 37
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
SQ SEQUENCE 190 AA; 21071 MW; 4F1D8AD0C4893F3C CRC64;
MASVRLFFTL ISFVFIISTS VYESKVLDPP HVAESFNVSL IQKLGNTCAY TVIISTSCSS
TRYTRDQISV AFGDGYGNQI YAPRLDDPST KTFEQCSSDT FQINGPCTYQ ICYVYLYRSG
PDGWIPNTVK IYSHGSKAVT FPYNTYVPES VWYGFNYCNS ASDSNVLAIG LRRSVIILLG
FVVAGTTLLL