ATS3_ARATH
ID ATS3_ARATH Reviewed; 213 AA.
AC Q9LYP6; O81271; Q94K23;
DT 30-NOV-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 132.
DE RecName: Full=Embryo-specific protein ATS3 {ECO:0000305};
DE AltName: Full=Protein ARABIDOPSIS THALIANA SEED 3 {ECO:0000305};
DE Flags: Precursor;
GN Name=ATS3 {ECO:0000303|PubMed:10380802};
GN OrderedLocusNames=At5g07190 {ECO:0000312|Araport:AT5G07190};
GN ORFNames=T28J14_130 {ECO:0000312|EMBL:CAB87275.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], TISSUE SPECIFICITY, AND DEVELOPMENTAL
RP STAGE.
RC STRAIN=cv. Landsberg erecta;
RX PubMed=10380802; DOI=10.1023/a:1006101404867;
RA Nuccio M.L., Thomas T.L.;
RT "ATS1 and ATS3: two novel embryo-specific genes in Arabidopsis thaliana.";
RL Plant Mol. Biol. 39:1153-1163(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: May play a role during embryo development. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences. {ECO:0000305};
CC Name=1;
CC IsoId=Q9LYP6-1; Sequence=Displayed;
CC -!- TISSUE SPECIFICITY: Expressed in seeds. Expression is restricted to the
CC developing embryo. {ECO:0000269|PubMed:10380802}.
CC -!- DEVELOPMENTAL STAGE: Expressed from the late torpedo stage to late
CC cotyledon stage in developing embryo. {ECO:0000269|PubMed:10380802}.
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DR EMBL; AF067858; AAC27073.1; -; Genomic_DNA.
DR EMBL; AL163652; CAB87275.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91119.1; -; Genomic_DNA.
DR EMBL; AF370461; AAK43838.1; -; mRNA.
DR EMBL; AY064694; AAL47396.1; -; mRNA.
DR PIR; T48490; T48490.
DR RefSeq; NP_196336.1; NM_120801.4. [Q9LYP6-1]
DR AlphaFoldDB; Q9LYP6; -.
DR SMR; Q9LYP6; -.
DR STRING; 3702.AT5G07190.1; -.
DR PaxDb; Q9LYP6; -.
DR PRIDE; Q9LYP6; -.
DR ProteomicsDB; 241012; -. [Q9LYP6-1]
DR EnsemblPlants; AT5G07190.1; AT5G07190.1; AT5G07190. [Q9LYP6-1]
DR GeneID; 830610; -.
DR Gramene; AT5G07190.1; AT5G07190.1; AT5G07190. [Q9LYP6-1]
DR KEGG; ath:AT5G07190; -.
DR Araport; AT5G07190; -.
DR TAIR; locus:2182865; AT5G07190.
DR InParanoid; Q9LYP6; -.
DR OrthoDB; 1362581at2759; -.
DR PhylomeDB; Q9LYP6; -.
DR PRO; PR:Q9LYP6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LYP6; baseline and differential.
DR GO; GO:0031225; C:anchored component of membrane; TAS:TAIR.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; TAS:TAIR.
DR InterPro; IPR010417; Embryo-specific_ATS3.
DR InterPro; IPR036392; PLAT/LH2_dom_sf.
DR Pfam; PF06232; ATS3; 1.
DR SUPFAM; SSF49723; SSF49723; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Glycoprotein; Reference proteome; Secreted; Signal.
FT SIGNAL 1..21
FT /evidence="ECO:0000255"
FT CHAIN 22..213
FT /note="Embryo-specific protein ATS3"
FT /id="PRO_5008180251"
FT DOMAIN 34..148
FT /note="PLAT"
FT /evidence="ECO:0000305"
FT REGION 147..188
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 155..185
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 149
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CONFLICT 74
FT /note="L -> S (in Ref. 1; AAC27073)"
FT /evidence="ECO:0000305"
FT CONFLICT 204
FT /note="A -> S (in Ref. 4; AAK43838/AAL47396)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 213 AA; 23083 MW; DE6230ACB1172834 CRC64;
MTFPSLSVSF LFFAFIFVTH AFDLSIIQMQ QGTCPYTVVV MTSCLSPEST RDQISIVFGD
ADGNKVYAPK LGGLVRGPGG LGKCSTNTFQ VRGQCLNDPI CSLYINRNGP DGWVPESIEI
YSEGSKSVKF DFSKSVPQLN TWYGHNNCNT TGRPSSPDLP PPHFPPEFPP ETPTTPPPPP
PRPSAASRLG NGESVFLAFA IATAIAAMVR WSY
