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RPOC_ORITB
ID   RPOC_ORITB              Reviewed;        1396 AA.
AC   A5CC92;
DT   23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT   12-JUN-2007, sequence version 1.
DT   03-AUG-2022, entry version 83.
DE   RecName: Full=DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
DE            Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
DE            EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};
DE   AltName: Full=RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
DE   AltName: Full=Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
GN   Name=rpoC {ECO:0000255|HAMAP-Rule:MF_01322}; OrderedLocusNames=OTBS_0207;
OS   Orientia tsutsugamushi (strain Boryong) (Rickettsia tsutsugamushi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
OC   Rickettsiaceae; Rickettsieae; Orientia.
OX   NCBI_TaxID=357244;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Boryong;
RX   PubMed=17483455; DOI=10.1073/pnas.0611553104;
RA   Cho N.-H., Kim H.-R., Lee J.-H., Kim S.-Y., Kim J., Cha S., Kim S.-Y.,
RA   Darby A.C., Fuxelius H.-H., Yin J., Kim J.H., Kim J., Lee S.J., Koh Y.-S.,
RA   Jang W.-J., Park K.-H., Andersson S.G.E., Choi M.-S., Kim I.-S.;
RT   "The Orientia tsutsugamushi genome reveals massive proliferation of
RT   conjugative type IV secretion system and host-cell interaction genes.";
RL   Proc. Natl. Acad. Sci. U.S.A. 104:7981-7986(2007).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000255|HAMAP-Rule:MF_01322}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01322};
CC   -!- COFACTOR:
CC       Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01322};
CC       Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP-Rule:MF_01322};
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01322};
CC       Note=Binds 2 Zn(2+) ions per subunit. {ECO:0000255|HAMAP-
CC       Rule:MF_01322};
CC   -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC       and 1 omega subunit. When a sigma factor is associated with the core
CC       the holoenzyme is formed, which can initiate transcription.
CC       {ECO:0000255|HAMAP-Rule:MF_01322}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000255|HAMAP-Rule:MF_01322}.
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DR   EMBL; AM494475; CAM79273.1; -; Genomic_DNA.
DR   RefSeq; WP_011944331.1; NC_009488.1.
DR   AlphaFoldDB; A5CC92; -.
DR   SMR; A5CC92; -.
DR   PRIDE; A5CC92; -.
DR   EnsemblBacteria; CAM79273; CAM79273; OTBS_0207.
DR   KEGG; ots:OTBS_0207; -.
DR   eggNOG; COG0086; Bacteria.
DR   HOGENOM; CLU_000524_3_1_5; -.
DR   OMA; YRNIRVE; -.
DR   Proteomes; UP000001565; Chromosome.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   Gene3D; 1.10.132.30; -; 1.
DR   Gene3D; 1.10.274.100; -; 1.
DR   Gene3D; 4.10.860.120; -; 1.
DR   HAMAP; MF_01322; RNApol_bact_RpoC; 1.
DR   InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR012754; DNA-dir_RpoC_beta_prime_bact.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR   InterPro; IPR038120; Rpb1_funnel_sf.
DR   PANTHER; PTHR19376; PTHR19376; 1.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 2.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   SMART; SM00663; RPOLA_N; 1.
DR   TIGRFAMs; TIGR02386; rpoC_TIGR; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase; Magnesium; Metal-binding;
KW   Nucleotidyltransferase; Reference proteome; Transcription; Transferase;
KW   Zinc.
FT   CHAIN           1..1396
FT                   /note="DNA-directed RNA polymerase subunit beta'"
FT                   /id="PRO_0000308870"
FT   BINDING         73
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         75
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         88
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         91
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         467
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         469
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         471
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         817
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         891
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         898
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
FT   BINDING         901
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01322"
SQ   SEQUENCE   1396 AA;  154863 MW;  AEAA37D41CD219BC CRC64;
     MVDITDFFKK TNKADSSQAF NQVRINIASP EQIRSWSYGE VTKPETINYR TFKPEKDGLF
     CAKIFGPVKD YECLCGKYKR MKYRGIVCEK CGVEVTTSKV RRERMGHIEL ASPIAHIWFV
     RSLPSRISIL LDMNLKDLER VIYFEAYIVM DPGLSPLHKG DLLTEEMLQQ AQNEYGEDNF
     IVGIGAEAIR TLLAELDLKS LRNALQEEVN NVINSDFKRK KILRRLKLIE DFIGSGNKPE
     WMIVTVLPII PPELRPLVML DAGRFASSDL NELYRRLINR NNRLKYLKKE EDGVPGIVLR
     NEQRMVQLSA DTLFDNGKRG KAVKNSNKRP FKSLSDMLKG KQGRFRQNLL GKRVDYSGRS
     VIVVGPELKL HQCGLPKQMA LELFKPFVYA ELERCGIATT IKAAKRIVEL GTPDVWNALA
     KVIKHHPVLL NRAPTLHCLS IQAFEPVLIE DKAIQLHPLV CTAFNADFDG DQMAVHVPLS
     TEAQLEARVL MMSTNNILSP ANGRPIIVPD KDIVLGLYYL TLSIDGEIGE GRLFGSMAEI
     HHALFNKVVS LHSKIKFRKH IINADGDKVM ALVNTTPGRL MLGELLPDGD NISFDVVNKV
     MTKKGISAIV DMVYRYYGQK ATVVFADKLM KLGFKYACIS GISFGMDDMI VPETKSKHVN
     DTLLEVQEFE RQYSEGLITS GEKYNKVIDA WSRYTDRVAN DMMKGIAAGD QTSVGLTNQE
     RLNSIFMMAD SEARSSVTQI KQLIGSKGLI AKASGEIIDR PILSNFCEGL TVFECFIGIP
     GTRKGLADTA VKTKVSGHLS RKLSESAHGY FVKREDCGTT NGLIITAVVE GGVIVVTLAE
     QVLGRVAVSN VYCPITKVLI LQQGEMIDEY KVELINTAGI NSIKVRSVLT CELQEGVCAK
     CYGRDLSTGK LVAIGTAVGI VAAQSIGEPG TQLTMRTFHI GGAATRGVEA SSFEAIVDGR
     VKIINPNFVV NSNNKSVIMS RSCEVILADN VGQEITRYKA QYGSILLVTD GQEVTKGTSL
     VAWDPYAMPI VTEKSGYVMF KDMIDGVSVK DIIDESTGIV NRVIIEPKQG RGEVVLRPRI
     CLLDQNKQPL TLSNGLEAEY FLPVNSILSV EEGANVSAGD ILARIPREFA GTKDITGGLP
     RVIELFEARK PKNHAVIAEI DGCVKFGKDY KSKRRLILQP NDECQEPIEY ILPKGRHVTV
     NEGDVVKKGD MLIEGSPVLQ DILKVMGVEA LGLYIINEIQ AVYRLQGVKI DNKHIEVIIT
     RMLQKVEITD SGDSNFVIEE KVNKREVINT NKKLKVKGLR EAQYRPILQG ITKASLQTQS
     FISAASFQET TRVLTEAAIA GKVDKLEGLK ENVIVGQTIP AGTGFYINEI KKIARQRDKE
     IIAAKDAELQ ENNTEA
 
 
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