RR17_ARATH
ID RR17_ARATH Reviewed; 149 AA.
AC P16180;
DT 01-APR-1990, integrated into UniProtKB/Swiss-Prot.
DT 01-APR-1990, sequence version 1.
DT 25-MAY-2022, entry version 151.
DE RecName: Full=30S ribosomal protein S17, chloroplastic;
DE AltName: Full=CS17;
DE Flags: Precursor;
GN Name=RPS17; OrderedLocusNames=At1g79850; ORFNames=F19K16.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=2406240; DOI=10.1016/s0021-9258(19)39867-9;
RA Gantt J.S., Thompson M.D.;
RT "Plant cytosolic ribosomal protein S11 and chloroplast ribosomal protein
RT CS17. Their primary structures and evolutionary relationships.";
RL J. Biol. Chem. 265:2763-2767(1990).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=1581570; DOI=10.1007/bf00019207;
RA Thompson M.D., Jacks C.M., Lenvik T.R., Gantt J.S.;
RT "Characterization of rps17, rp19 and rpl15: three nucleus-encoded plastid
RT ribosomal protein genes.";
RL Plant Mol. Biol. 18:931-944(1992).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
RN [7]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=22900828; DOI=10.1111/tpj.12000;
RA Romani I., Tadini L., Rossi F., Masiero S., Pribil M., Jahns P., Kater M.,
RA Leister D., Pesaresi P.;
RT "Versatile roles of Arabidopsis plastid ribosomal proteins in plant growth
RT and development.";
RL Plant J. 72:922-934(2012).
CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds
CC specifically to the 5'-end of 16S ribosomal RNA (By similarity).
CC Required for optimal plastid performance in terms of photosynthesis and
CC growth. Required for the translation of plastid mRNAs. Plays a critical
CC role in biosynthesis of thylakoid membrane proteins encoded by
CC chloroplast genes (PubMed:22900828). {ECO:0000250,
CC ECO:0000269|PubMed:22900828}.
CC -!- SUBUNIT: Part of the 30S ribosomal subunit.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- DISRUPTION PHENOTYPE: Reduced plant size and pale green leaves.
CC {ECO:0000269|PubMed:22900828}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS17 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAA84030.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR EMBL; J05215; AAA84030.1; ALT_INIT; mRNA.
DR EMBL; Z11151; CAA77502.1; -; Genomic_DNA.
DR EMBL; AC011717; AAG52237.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36313.1; -; Genomic_DNA.
DR EMBL; AF386974; AAK62419.1; -; mRNA.
DR EMBL; AY072539; AAL66954.1; -; mRNA.
DR PIR; S20942; R3MU17.
DR RefSeq; NP_178103.1; NM_106634.2.
DR AlphaFoldDB; P16180; -.
DR SMR; P16180; -.
DR BioGRID; 29542; 3.
DR STRING; 3702.AT1G79850.1; -.
DR iPTMnet; P16180; -.
DR PaxDb; P16180; -.
DR PRIDE; P16180; -.
DR ProteomicsDB; 226745; -.
DR EnsemblPlants; AT1G79850.1; AT1G79850.1; AT1G79850.
DR GeneID; 844324; -.
DR Gramene; AT1G79850.1; AT1G79850.1; AT1G79850.
DR KEGG; ath:AT1G79850; -.
DR Araport; AT1G79850; -.
DR TAIR; locus:2017849; AT1G79850.
DR eggNOG; KOG1740; Eukaryota.
DR HOGENOM; CLU_119752_1_0_1; -.
DR InParanoid; P16180; -.
DR OMA; NHRMPAL; -.
DR OrthoDB; 1515865at2759; -.
DR PhylomeDB; P16180; -.
DR PRO; PR:P16180; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; P16180; differential.
DR Genevisible; P16180; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0000312; C:plastid small ribosomal subunit; ISS:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0032544; P:plastid translation; IMP:TAIR.
DR Gene3D; 2.40.50.140; -; 1.
DR HAMAP; MF_01345_B; Ribosomal_S17_B; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR019984; Ribosomal_S17.
DR InterPro; IPR000266; Ribosomal_S17/S11.
DR InterPro; IPR019979; Ribosomal_S17_CS.
DR PANTHER; PTHR10744; PTHR10744; 1.
DR Pfam; PF00366; Ribosomal_S17; 1.
DR PRINTS; PR00973; RIBOSOMALS17.
DR SUPFAM; SSF50249; SSF50249; 1.
DR PROSITE; PS00056; RIBOSOMAL_S17; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide.
FT TRANSIT 1..49
FT /note="Chloroplast"
FT /evidence="ECO:0000250"
FT CHAIN 50..149
FT /note="30S ribosomal protein S17, chloroplastic"
FT /id="PRO_0000030620"
SQ SEQUENCE 149 AA; 16282 MW; FC13BF2801F2C260 CRC64;
MITSSLTSSL QALKLSSPFA HGSTPLSSLS KPNSFPNHRM PALVPVIRAM KTMQGRVVCA
TSDKTVAVEV VRLAPHPKYK RRVRMKKKYQ AHDPDNQFKV GDVVRLEKSR PISKTKSFVA
LPVIARAARK AEAGGDELLG LPLESQQPA
