RR20_ARATH
ID RR20_ARATH Reviewed; 202 AA.
AC Q9ASV6; Q9LIL6;
DT 05-SEP-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=30S ribosomal protein S20, chloroplastic;
DE Flags: Precursor;
GN Name=RPS20; OrderedLocusNames=At3g15190; ORFNames=F4B12.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP DISRUPTION PHENOTYPE.
RX PubMed=22900828; DOI=10.1111/tpj.12000;
RA Romani I., Tadini L., Rossi F., Masiero S., Pribil M., Jahns P., Kater M.,
RA Leister D., Pesaresi P.;
RT "Versatile roles of Arabidopsis plastid ribosomal proteins in plant growth
RT and development.";
RL Plant J. 72:922-934(2012).
CC -!- FUNCTION: Binds directly to 16S ribosomal RNA. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000250}.
CC -!- DISRUPTION PHENOTYPE: Embryonic lethality. Embryo development arrested
CC at the globular stage. {ECO:0000269|PubMed:22900828}.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bS20 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB02573.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP001299; BAB02573.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE75630.1; -; Genomic_DNA.
DR EMBL; AF361807; AAK32820.1; -; mRNA.
DR EMBL; AF370555; AAK48982.1; -; mRNA.
DR EMBL; AY055105; AAL05905.1; -; mRNA.
DR EMBL; AY072522; AAL66937.1; -; mRNA.
DR EMBL; AY086352; AAM64420.1; -; mRNA.
DR RefSeq; NP_188137.1; NM_112382.4.
DR AlphaFoldDB; Q9ASV6; -.
DR SMR; Q9ASV6; -.
DR BioGRID; 6084; 6.
DR STRING; 3702.AT3G15190.1; -.
DR PaxDb; Q9ASV6; -.
DR PRIDE; Q9ASV6; -.
DR ProteomicsDB; 228226; -.
DR EnsemblPlants; AT3G15190.1; AT3G15190.1; AT3G15190.
DR GeneID; 820750; -.
DR Gramene; AT3G15190.1; AT3G15190.1; AT3G15190.
DR KEGG; ath:AT3G15190; -.
DR Araport; AT3G15190; -.
DR TAIR; locus:2083661; AT3G15190.
DR eggNOG; ENOG502RXSZ; Eukaryota.
DR HOGENOM; CLU_109118_1_0_1; -.
DR InParanoid; Q9ASV6; -.
DR OMA; CANLNSK; -.
DR OrthoDB; 1510549at2759; -.
DR PhylomeDB; Q9ASV6; -.
DR PRO; PR:Q9ASV6; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9ASV6; baseline and differential.
DR Genevisible; Q9ASV6; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0015935; C:small ribosomal subunit; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0070181; F:small ribosomal subunit rRNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 1.20.58.110; -; 1.
DR HAMAP; MF_00500; Ribosomal_S20; 1.
DR InterPro; IPR002583; Ribosomal_S20.
DR InterPro; IPR036510; Ribosomal_S20_sf.
DR PANTHER; PTHR33398; PTHR33398; 1.
DR Pfam; PF01649; Ribosomal_S20p; 1.
DR SUPFAM; SSF46992; SSF46992; 1.
DR TIGRFAMs; TIGR00029; S20; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide.
FT TRANSIT 1..79
FT /note="Chloroplast"
FT /evidence="ECO:0000250"
FT CHAIN 80..202
FT /note="30S ribosomal protein S20, chloroplastic"
FT /id="PRO_0000249412"
FT REGION 89..110
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 202 AA; 21826 MW; 0ADF7EA6AE073B5C CRC64;
MATIVQCLSS CATLESQFKV LSLKGISCSS PSSSFSNRRG ASATLSSSLS FSQSVSQCVA
FSTGNLWVQK PMRQLIVCEA AAPTKKADSA AKRARQAEKR RVYNKSKKSE ARTRMKKVLE
ALEGLKKKTD AQADEIVTVE KLIGEAYSAI DKAVKVKALH KNTGARRKSR LARRKKAVEI
HHGWYVPDAA AAAPSEAVPM AA
