RR5_ARATH
ID RR5_ARATH Reviewed; 303 AA.
AC P93014;
DT 05-SEP-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1997, sequence version 1.
DT 25-MAY-2022, entry version 137.
DE RecName: Full=30S ribosomal protein S5, chloroplastic;
DE Flags: Precursor;
GN Name=rps5; OrderedLocusNames=At2g33800; ORFNames=T1B8.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Binds directly to 16S ribosomal RNA. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 30S ribosomal subunit.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS5 family.
CC {ECO:0000305}.
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DR EMBL; U78721; AAC69132.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08888.1; -; Genomic_DNA.
DR EMBL; AY093289; AAM13288.1; -; mRNA.
DR EMBL; AY054523; AAK96714.1; -; mRNA.
DR EMBL; AY087734; AAM65271.1; -; mRNA.
DR PIR; G84749; G84749.
DR RefSeq; NP_180936.1; NM_128939.4.
DR AlphaFoldDB; P93014; -.
DR SMR; P93014; -.
DR BioGRID; 3294; 9.
DR IntAct; P93014; 1.
DR STRING; 3702.AT2G33800.1; -.
DR MetOSite; P93014; -.
DR World-2DPAGE; 0003:P93014; -.
DR PaxDb; P93014; -.
DR PRIDE; P93014; -.
DR ProteomicsDB; 228197; -.
DR EnsemblPlants; AT2G33800.1; AT2G33800.1; AT2G33800.
DR GeneID; 817947; -.
DR Gramene; AT2G33800.1; AT2G33800.1; AT2G33800.
DR KEGG; ath:AT2G33800; -.
DR Araport; AT2G33800; -.
DR TAIR; locus:2057645; AT2G33800.
DR eggNOG; KOG0877; Eukaryota.
DR HOGENOM; CLU_075168_1_0_1; -.
DR InParanoid; P93014; -.
DR OMA; KFICSST; -.
DR OrthoDB; 1504411at2759; -.
DR PhylomeDB; P93014; -.
DR PRO; PR:P93014; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; P93014; baseline and differential.
DR Genevisible; P93014; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0005783; C:endoplasmic reticulum; HDA:TAIR.
DR GO; GO:0005763; C:mitochondrial small ribosomal subunit; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0009955; P:adaxial/abaxial pattern specification; IGI:TAIR.
DR GO; GO:1901259; P:chloroplast rRNA processing; IMP:TAIR.
DR GO; GO:0032544; P:plastid translation; IMP:TAIR.
DR GO; GO:0009409; P:response to cold; IMP:TAIR.
DR GO; GO:0006412; P:translation; IBA:GO_Central.
DR Gene3D; 3.30.230.10; -; 1.
DR HAMAP; MF_01307_B; Ribosomal_S5_B; 1.
DR InterPro; IPR000851; Ribosomal_S5.
DR InterPro; IPR005712; Ribosomal_S5_bac-type.
DR InterPro; IPR005324; Ribosomal_S5_C.
DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold.
DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr.
DR InterPro; IPR013810; Ribosomal_S5_N.
DR InterPro; IPR018192; Ribosomal_S5_N_CS.
DR PANTHER; PTHR13718; PTHR13718; 1.
DR Pfam; PF00333; Ribosomal_S5; 1.
DR Pfam; PF03719; Ribosomal_S5_C; 1.
DR SUPFAM; SSF54211; SSF54211; 1.
DR TIGRFAMs; TIGR01021; rpsE_bact; 1.
DR PROSITE; PS00585; RIBOSOMAL_S5; 1.
DR PROSITE; PS50881; S5_DSRBD; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN ?..303
FT /note="30S ribosomal protein S5, chloroplastic"
FT /id="PRO_0000248271"
FT DOMAIN 147..210
FT /note="S5 DRBM"
SQ SEQUENCE 303 AA; 32645 MW; 81148F6F8CA0F1CA CRC64;
MATASALSSL SSLSLHTRTS SLISSSSTKS IVSFSSFLNR RFSSLTLVKA SSTDTETIFF
EDETPEITAN VVFDPPIAPE GFVSPPYFDE GSDETEEEIA TAFEELYGPA YSGESMLGKD
IYVMDSKHKK SSGIGGKPKK DKIRDGFEER VVQVRRVTKV VKGGKQLKFR AIVVVGDKQG
NVGVGCAKAK EVVAAVQKSA IDARRNIVQV PMTKYSTFPH RSEGDYGAAK VMLRPASPGT
GVIAGGAVRI VLEMAGVENA LGKQLGSNNA LNNARATLAA VQQMRQFRDV AQERGIPMEE
LWK
