RRC1L_ARATH
ID RRC1L_ARATH Reviewed; 947 AA.
AC F4KIA8; Q9LEV9;
DT 13-APR-2016, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 25-MAY-2022, entry version 69.
DE RecName: Full=Protein RRC1-like {ECO:0000305};
DE AltName: Full=Reduced red-light responses in CRY1CRY2 background 1-like protein {ECO:0000305};
GN OrderedLocusNames=At5g10800 {ECO:0000312|Araport:AT5G10800};
GN ORFNames=T30N20.70 {ECO:0000312|EMBL:CAB96835.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
RX PubMed=22324426; DOI=10.1111/j.1365-313x.2012.04937.x;
RA Shikata H., Shibata M., Ushijima T., Nakashima M., Kong S.G., Matsuoka K.,
RA Lin C., Matsushita T.;
RT "The RS domain of Arabidopsis splicing factor RRC1 is required for
RT phytochrome B signal transduction.";
RL Plant J. 70:727-738(2012).
CC -!- FUNCTION: Probable SR-like splicing factor.
CC {ECO:0000250|UniProtKB:Q9C5J3}.
CC -!- TISSUE SPECIFICITY: Expressed in leaves, inflorescence stems, roots,
CC flower buds, open flowers and siliques. {ECO:0000269|PubMed:22324426}.
CC -!- DISRUPTION PHENOTYPE: No photomorphogenic phenotype.
CC {ECO:0000269|PubMed:22324426}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB96835.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL365234; CAB96835.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED91598.1; -; Genomic_DNA.
DR PIR; T50789; T50789.
DR RefSeq; NP_196641.2; NM_121118.5.
DR AlphaFoldDB; F4KIA8; -.
DR SMR; F4KIA8; -.
DR IntAct; F4KIA8; 1.
DR STRING; 3702.AT5G10800.1; -.
DR PaxDb; F4KIA8; -.
DR PRIDE; F4KIA8; -.
DR EnsemblPlants; AT5G10800.1; AT5G10800.1; AT5G10800.
DR GeneID; 830947; -.
DR Gramene; AT5G10800.1; AT5G10800.1; AT5G10800.
DR KEGG; ath:AT5G10800; -.
DR Araport; AT5G10800; -.
DR TAIR; locus:2183775; AT5G10800.
DR eggNOG; KOG0151; Eukaryota.
DR HOGENOM; CLU_010743_2_0_1; -.
DR InParanoid; F4KIA8; -.
DR OrthoDB; 523911at2759; -.
DR PRO; PR:F4KIA8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; F4KIA8; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd12223; RRM_SR140; 1.
DR Gene3D; 1.10.10.790; -; 1.
DR Gene3D; 1.25.40.90; -; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR006569; CID_dom.
DR InterPro; IPR008942; ENTH_VHS.
DR InterPro; IPR013170; mRNA_splic_Cwf21_dom.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR035009; SR140_RRM.
DR InterPro; IPR000061; Surp.
DR InterPro; IPR035967; SWAP/Surp_sf.
DR Pfam; PF04818; CID; 1.
DR Pfam; PF08312; cwf21; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF01805; Surp; 1.
DR SMART; SM01115; cwf21; 1.
DR SMART; SM00582; RPR; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00648; SWAP; 1.
DR SUPFAM; SSF109905; SSF109905; 1.
DR SUPFAM; SSF48464; SSF48464; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR PROSITE; PS51391; CID; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50128; SURP; 1.
PE 2: Evidence at transcript level;
KW mRNA processing; mRNA splicing; Reference proteome; RNA-binding.
FT CHAIN 1..947
FT /note="Protein RRC1-like"
FT /id="PRO_0000436039"
FT DOMAIN 187..268
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT REPEAT 336..379
FT /note="SURP motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00263"
FT DOMAIN 444..589
FT /note="CID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00724"
FT DOMAIN 638..672
FT /note="SAP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00186"
FT REGION 1..35
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 63..167
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 412..434
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 752..797
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 846..947
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..15
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 16..34
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 69..85
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 104..159
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 776..797
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 846..876
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 888..947
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 947 AA; 109185 MW; 6E7A83308295F27E CRC64;
MVKDEFFLDH PGRKHRSRNT EKKKKPRRRE RRMKQLVCIK SPWNRFKGIM LQLRLLLEVT
INPNDNKLKP DSQGEKSRDG DSISKKGSRY VPSFLPPPLA SKGKGPENKR DEERSKEMEK
GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD
DGDPQTTNLY VVNLSSKVDE NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN
RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR
GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY IMIAGSGRWI PPPLPATRSP
EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA
GEVVEVLTES LTLKETSIPT KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF
NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG
REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN IEPKRMKTSY DKVETEEPVD
LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD
EEDLKADPSV RVQPENEIDV EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK
RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR
