RRFC_ARATH
ID RRFC_ARATH Reviewed; 275 AA.
AC Q9M1X0; Q93V42;
DT 26-JUL-2002, integrated into UniProtKB/Swiss-Prot.
DT 26-JUL-2002, sequence version 2.
DT 25-MAY-2022, entry version 137.
DE RecName: Full=Ribosome-recycling factor, chloroplastic;
DE Short=RRF;
DE AltName: Full=CpFrr;
DE AltName: Full=RRFHCP;
DE AltName: Full=Ribosome-releasing factor, chloroplastic;
DE Flags: Precursor;
GN Name=RRF; OrderedLocusNames=At3g63190; ORFNames=F16M2_40;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: Responsible for the release of ribosomes from messenger RNA
CC at the termination of chloroplastic protein biosynthesis.
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the RRF family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB86420.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL138648; CAB86420.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE80446.1; -; Genomic_DNA.
DR EMBL; AF372883; AAK49599.1; -; mRNA.
DR EMBL; AY056778; AAL09724.1; -; mRNA.
DR EMBL; AY092982; AAM12981.1; -; mRNA.
DR EMBL; BT002678; AAO11594.1; -; mRNA.
DR RefSeq; NP_567141.1; NM_116184.4.
DR AlphaFoldDB; Q9M1X0; -.
DR SMR; Q9M1X0; -.
DR BioGRID; 10808; 4.
DR STRING; 3702.AT3G63190.1; -.
DR iPTMnet; Q9M1X0; -.
DR MetOSite; Q9M1X0; -.
DR PaxDb; Q9M1X0; -.
DR PRIDE; Q9M1X0; -.
DR ProteomicsDB; 236194; -.
DR EnsemblPlants; AT3G63190.1; AT3G63190.1; AT3G63190.
DR GeneID; 825494; -.
DR Gramene; AT3G63190.1; AT3G63190.1; AT3G63190.
DR KEGG; ath:AT3G63190; -.
DR Araport; AT3G63190; -.
DR TAIR; locus:2077254; AT3G63190.
DR eggNOG; KOG4759; Eukaryota.
DR HOGENOM; CLU_073981_3_0_1; -.
DR InParanoid; Q9M1X0; -.
DR OMA; FNPMNNG; -.
DR OrthoDB; 1472838at2759; -.
DR PhylomeDB; Q9M1X0; -.
DR PRO; PR:Q9M1X0; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M1X0; baseline and differential.
DR Genevisible; Q9M1X0; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR GO; GO:0005507; F:copper ion binding; HDA:TAIR.
DR GO; GO:0043023; F:ribosomal large subunit binding; IBA:GO_Central.
DR GO; GO:0009658; P:chloroplast organization; IMP:TAIR.
DR GO; GO:0050832; P:defense response to fungus; IDA:TAIR.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
DR GO; GO:0032544; P:plastid translation; IMP:TAIR.
DR GO; GO:0006412; P:translation; IBA:GO_Central.
DR CDD; cd00520; RRF; 1.
DR Gene3D; 1.10.132.20; -; 1.
DR HAMAP; MF_00040; RRF; 1.
DR InterPro; IPR002661; Ribosome_recyc_fac.
DR InterPro; IPR023584; Ribosome_recyc_fac_dom.
DR InterPro; IPR036191; RRF_sf.
DR PANTHER; PTHR20982; PTHR20982; 1.
DR Pfam; PF01765; RRF; 1.
DR SUPFAM; SSF55194; SSF55194; 1.
DR TIGRFAMs; TIGR00496; frr; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Coiled coil; Plastid; Protein biosynthesis;
KW Reference proteome; Transit peptide.
FT TRANSIT 1..82
FT /note="Chloroplast"
FT /evidence="ECO:0000305"
FT CHAIN 83..275
FT /note="Ribosome-recycling factor, chloroplastic"
FT /id="PRO_0000282651"
FT COILED 215..271
FT /evidence="ECO:0000255"
SQ SEQUENCE 275 AA; 30422 MW; F8A01D363C3979D8 CRC64;
MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA
GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK SKMEKTIETL RTSFNSIRTG
RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT
PNNDGDVIRL SLPPLTSDRR KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE
DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV
