RRP31_ARATH
ID RRP31_ARATH Reviewed; 166 AA.
AC Q9SX22; Q8LD87;
DT 12-FEB-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 120.
DE RecName: Full=30S ribosomal protein 3-1, chloroplastic;
DE AltName: Full=Plastid-specific 30S ribosomal protein 3-1;
DE Short=PSRP-3 1;
DE Flags: Precursor;
GN OrderedLocusNames=At1g68590; ORFNames=F24J5.17;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Probably a ribosomal protein or a ribosome-associated
CC protein. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000250}.
CC -!- INTERACTION:
CC Q9SX22; Q9FYK5: ESR2; NbExp=3; IntAct=EBI-4424705, EBI-1536925;
CC Q9SX22; Q39101: FER1; NbExp=3; IntAct=EBI-4424705, EBI-25513208;
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9SX22-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the chloroplast-specific ribosomal protein cS23
CC family. {ECO:0000305}.
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DR EMBL; AC008075; AAD49984.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34816.1; -; Genomic_DNA.
DR EMBL; BT003990; AAO42029.1; -; mRNA.
DR EMBL; BT005090; AAO50623.1; -; mRNA.
DR EMBL; AY086145; AAM63350.1; -; mRNA.
DR PIR; C96710; C96710.
DR RefSeq; NP_564934.1; NM_105531.4. [Q9SX22-1]
DR AlphaFoldDB; Q9SX22; -.
DR SMR; Q9SX22; -.
DR BioGRID; 28410; 4.
DR IntAct; Q9SX22; 3.
DR STRING; 3702.AT1G68590.1; -.
DR PaxDb; Q9SX22; -.
DR PRIDE; Q9SX22; -.
DR EnsemblPlants; AT1G68590.1; AT1G68590.1; AT1G68590. [Q9SX22-1]
DR GeneID; 843189; -.
DR Gramene; AT1G68590.1; AT1G68590.1; AT1G68590. [Q9SX22-1]
DR KEGG; ath:AT1G68590; -.
DR Araport; AT1G68590; -.
DR TAIR; locus:2026940; AT1G68590.
DR eggNOG; ENOG502S13Q; Eukaryota.
DR InParanoid; Q9SX22; -.
DR PhylomeDB; Q9SX22; -.
DR PRO; PR:Q9SX22; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SX22; baseline and differential.
DR Genevisible; Q9SX22; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0032544; P:plastid translation; IMP:TAIR.
DR Gene3D; 3.30.390.140; -; 1.
DR InterPro; IPR038447; PSRP-3/Ycf65_sf.
DR InterPro; IPR006924; Ribosomal_PSRP3/Ycf65.
DR PANTHER; PTHR35108; PTHR35108; 1.
DR Pfam; PF04839; PSRP-3_Ycf65; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Chloroplast; Plastid; Reference proteome;
KW Ribonucleoprotein; Ribosomal protein; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN ?..166
FT /note="30S ribosomal protein 3-1, chloroplastic"
FT /id="PRO_0000041522"
FT CONFLICT 74
FT /note="I -> T (in Ref. 4; AAM63350)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 166 AA; 18472 MW; 96CAC99A2AB13F3A CRC64;
MMSSMALSST SLCSSFISQH PKLSITASPP LFHTQTTKPI SVKRKIITLA APETLTAETV
TGIDTSDNTP QQTIKVVKPD EKSRVVLKFV WMEKNIGLGL DQHVPGHGTI PLSPYFFWPR
KDAWEELKST LEAKPWISQK KMIILLNQAT DIINLWQQSG GNLTSQ
