RS13_MYCS2
ID RS13_MYCS2 Reviewed; 124 AA.
AC A0QSL5; I7FGI4;
DT 02-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 09-JAN-2007, sequence version 1.
DT 25-MAY-2022, entry version 97.
DE RecName: Full=30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315};
GN Name=rpsM {ECO:0000255|HAMAP-Rule:MF_01315};
GN OrderedLocusNames=MSMEG_1521, MSMEI_1485;
OS Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium
OS smegmatis).
OC Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
OC Mycolicibacterium.
OX NCBI_TaxID=246196;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RA Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C.,
RA Fraser C.M.;
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=17295914; DOI=10.1186/gb-2007-8-2-r20;
RA Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C.,
RA Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.-M.;
RT "Interrupted coding sequences in Mycobacterium smegmatis: authentic
RT mutations or sequencing errors?";
RL Genome Biol. 8:R20.1-R20.9(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND IDENTIFICATION BY MASS
RP SPECTROMETRY [LARGE SCALE ANALYSIS].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=18955433; DOI=10.1101/gr.081901.108;
RA Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.-M.,
RA Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.;
RT "Ortho-proteogenomics: multiple proteomes investigation through orthology
RT and a new MS-based protocol.";
RL Genome Res. 19:128-135(2009).
CC -!- FUNCTION: Located at the top of the head of the 30S subunit, it
CC contacts several helices of the 16S rRNA. In the 70S ribosome it
CC contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit
CC (bridge B1b), connecting the 2 subunits; these bridges are implicated
CC in subunit movement. Contacts the tRNAs in the A and P-sites.
CC {ECO:0000255|HAMAP-Rule:MF_01315}.
CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Forms a loose heterodimer
CC with protein S19. Forms two bridges to the 50S subunit in the 70S
CC ribosome. {ECO:0000255|HAMAP-Rule:MF_01315}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS13 family.
CC {ECO:0000255|HAMAP-Rule:MF_01315}.
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DR EMBL; CP000480; ABK76170.1; -; Genomic_DNA.
DR EMBL; CP001663; AFP37958.1; -; Genomic_DNA.
DR RefSeq; WP_004571523.1; NZ_SIJM01000016.1.
DR RefSeq; YP_885903.1; NC_008596.1.
DR PDB; 5O5J; EM; 3.45 A; M=1-124.
DR PDB; 5O61; EM; 3.31 A; BM=1-124.
DR PDB; 5XYU; EM; 3.45 A; M=1-124.
DR PDB; 5ZEB; EM; 3.40 A; m=1-124.
DR PDB; 5ZEP; EM; 3.40 A; m=1-124.
DR PDB; 5ZEU; EM; 3.70 A; m=1-124.
DR PDB; 6DZI; EM; 3.46 A; v=2-117.
DR PDB; 6DZK; EM; 3.60 A; M=1-124.
DR PDBsum; 5O5J; -.
DR PDBsum; 5O61; -.
DR PDBsum; 5XYU; -.
DR PDBsum; 5ZEB; -.
DR PDBsum; 5ZEP; -.
DR PDBsum; 5ZEU; -.
DR PDBsum; 6DZI; -.
DR PDBsum; 6DZK; -.
DR AlphaFoldDB; A0QSL5; -.
DR SMR; A0QSL5; -.
DR IntAct; A0QSL5; 2.
DR STRING; 246196.MSMEI_1485; -.
DR PRIDE; A0QSL5; -.
DR EnsemblBacteria; ABK76170; ABK76170; MSMEG_1521.
DR EnsemblBacteria; AFP37958; AFP37958; MSMEI_1485.
DR GeneID; 66732978; -.
DR KEGG; msg:MSMEI_1485; -.
DR KEGG; msm:MSMEG_1521; -.
DR PATRIC; fig|246196.19.peg.1506; -.
DR eggNOG; COG0099; Bacteria.
DR OMA; YRGLRHK; -.
DR OrthoDB; 1772647at2; -.
DR Proteomes; UP000000757; Chromosome.
DR Proteomes; UP000006158; Chromosome.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR Gene3D; 4.10.910.10; -; 1.
DR HAMAP; MF_01315; Ribosomal_S13_S18; 1.
DR InterPro; IPR027437; 30s_Rbsml_prot_S13_C.
DR InterPro; IPR001892; Ribosomal_S13.
DR InterPro; IPR010979; Ribosomal_S13-like_H2TH.
DR InterPro; IPR019980; Ribosomal_S13_bac-type.
DR InterPro; IPR018269; Ribosomal_S13_CS.
DR PANTHER; PTHR10871:SF1; PTHR10871:SF1; 1.
DR Pfam; PF00416; Ribosomal_S13; 1.
DR PIRSF; PIRSF002134; Ribosomal_S13; 1.
DR SUPFAM; SSF46946; SSF46946; 1.
DR TIGRFAMs; TIGR03631; uS13_bact; 1.
DR PROSITE; PS00646; RIBOSOMAL_S13_1; 1.
DR PROSITE; PS50159; RIBOSOMAL_S13_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW RNA-binding; rRNA-binding; tRNA-binding.
FT CHAIN 1..124
FT /note="30S ribosomal protein S13"
FT /id="PRO_0000306648"
FT REGION 95..124
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT TURN 4..6
FT /evidence="ECO:0007829|PDB:5XYU"
FT STRAND 12..14
FT /evidence="ECO:0007829|PDB:5XYU"
FT HELIX 15..18
FT /evidence="ECO:0007829|PDB:5XYU"
FT HELIX 19..21
FT /evidence="ECO:0007829|PDB:5XYU"
FT HELIX 27..36
FT /evidence="ECO:0007829|PDB:5XYU"
FT STRAND 44..48
FT /evidence="ECO:0007829|PDB:5XYU"
FT HELIX 50..63
FT /evidence="ECO:0007829|PDB:5XYU"
FT HELIX 68..83
FT /evidence="ECO:0007829|PDB:5XYU"
FT HELIX 87..90
FT /evidence="ECO:0007829|PDB:5XYU"
FT TURN 91..95
FT /evidence="ECO:0007829|PDB:5XYU"
FT STRAND 98..100
FT /evidence="ECO:0007829|PDB:5XYU"
FT HELIX 108..111
FT /evidence="ECO:0007829|PDB:5XYU"
SQ SEQUENCE 124 AA; 14218 MW; B6A3ECB1466A82FD CRC64;
MARLVGVDLP RDKRMEIALT YIYGIGRTRS NEILAATGID KNMRTKDLTD DQVTVLRDYI
EGNLKVEGDL RREVQADIRR KIEIGCYQGL RHRRGLPVRG QRTKTNARTR KGPKRTIAGK
KKAR
