RS13_RAT
ID RS13_RAT Reviewed; 151 AA.
AC P62278; P19116; Q02546; Q29200;
DT 05-JUL-2004, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 2.
DT 03-AUG-2022, entry version 139.
DE RecName: Full=40S ribosomal protein S13;
GN Name=Rps13;
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Rattus.
OX NCBI_TaxID=10116;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND PROTEIN SEQUENCE OF N-TERMINUS.
RC STRAIN=Sprague-Dawley; TISSUE=Liver;
RX PubMed=2403345; DOI=10.1016/0006-291x(90)91176-s;
RA Suzuki K., Olvera J., Wool I.G.;
RT "The primary structure of rat ribosomal protein S13.";
RL Biochem. Biophys. Res. Commun. 171:519-524(1990).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Brain;
RX PubMed=15489334; DOI=10.1101/gr.2596504;
RG The MGC Project Team;
RT "The status, quality, and expansion of the NIH full-length cDNA project:
RT the Mammalian Gene Collection (MGC).";
RL Genome Res. 14:2121-2127(2004).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 123-151.
RA Denis M.G.;
RT "Isolation of a cloned cDNA encoding the rat S13 ribosomal protein.";
RL Submitted (SEP-1992) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS15 family.
CC {ECO:0000305}.
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DR EMBL; X53378; CAA37458.1; -; mRNA.
DR EMBL; BC084724; AAH84724.1; -; mRNA.
DR EMBL; L01123; AAB59695.1; -; mRNA.
DR PIR; A35889; R3RT13.
DR RefSeq; NP_569116.1; NM_130432.2.
DR RefSeq; XP_001053043.1; XM_001053043.5.
DR RefSeq; XP_003753737.1; XM_003753689.3.
DR AlphaFoldDB; P62278; -.
DR SMR; P62278; -.
DR BioGRID; 250909; 4.
DR IntAct; P62278; 10.
DR MINT; P62278; -.
DR STRING; 10116.ENSRNOP00000036690; -.
DR iPTMnet; P62278; -.
DR PhosphoSitePlus; P62278; -.
DR jPOST; P62278; -.
DR PaxDb; P62278; -.
DR PRIDE; P62278; -.
DR Ensembl; ENSRNOT00000096261; ENSRNOP00000095846; ENSRNOG00000067444.
DR GeneID; 161477; -.
DR GeneID; 684988; -.
DR KEGG; rno:161477; -.
DR KEGG; rno:684988; -.
DR UCSC; RGD:621027; rat.
DR CTD; 6207; -.
DR RGD; 621027; Rps13.
DR VEuPathDB; HostDB:ENSRNOG00000038746; -.
DR eggNOG; KOG0400; Eukaryota.
DR GeneTree; ENSGT00390000017491; -.
DR HOGENOM; CLU_090139_1_0_1; -.
DR InParanoid; P62278; -.
DR OMA; EEHPKDM; -.
DR OrthoDB; 1387147at2759; -.
DR PhylomeDB; P62278; -.
DR TreeFam; TF300190; -.
DR Reactome; R-RNO-156827; L13a-mediated translational silencing of Ceruloplasmin expression.
DR Reactome; R-RNO-1799339; SRP-dependent cotranslational protein targeting to membrane.
DR Reactome; R-RNO-6791226; Major pathway of rRNA processing in the nucleolus and cytosol.
DR Reactome; R-RNO-72649; Translation initiation complex formation.
DR Reactome; R-RNO-72689; Formation of a pool of free 40S subunits.
DR Reactome; R-RNO-72695; Formation of the ternary complex, and subsequently, the 43S complex.
DR Reactome; R-RNO-72702; Ribosomal scanning and start codon recognition.
DR Reactome; R-RNO-72706; GTP hydrolysis and joining of the 60S ribosomal subunit.
DR Reactome; R-RNO-975956; Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
DR Reactome; R-RNO-975957; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
DR PRO; PR:P62278; -.
DR Proteomes; UP000002494; Chromosome 3.
DR Bgee; ENSRNOG00000028021; Expressed in thymus and 19 other tissues.
DR Genevisible; P62278; RN.
DR GO; GO:0022626; C:cytosolic ribosome; ISO:RGD.
DR GO; GO:0022627; C:cytosolic small ribosomal subunit; IDA:RGD.
DR GO; GO:0005730; C:nucleolus; ISO:RGD.
DR GO; GO:0005634; C:nucleus; ISO:RGD.
DR GO; GO:0014069; C:postsynaptic density; ISO:RGD.
DR GO; GO:0045202; C:synapse; IDA:SynGO.
DR GO; GO:1990932; F:5.8S rRNA binding; IDA:RGD.
DR GO; GO:0048027; F:mRNA 5'-UTR binding; ISO:RGD.
DR GO; GO:0003729; F:mRNA binding; ISO:RGD.
DR GO; GO:0070181; F:small ribosomal subunit rRNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; ISO:RGD.
DR GO; GO:0033119; P:negative regulation of RNA splicing; ISO:RGD.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd00353; Ribosomal_S15p_S13e; 1.
DR HAMAP; MF_01343_A; Ribosomal_S15_A; 1.
DR InterPro; IPR012606; Ribosomal_S13/S15_N.
DR InterPro; IPR000589; Ribosomal_S15.
DR InterPro; IPR023029; Ribosomal_S15P.
DR InterPro; IPR009068; S15_NS1_RNA-bd.
DR PANTHER; PTHR11885; PTHR11885; 1.
DR Pfam; PF08069; Ribosomal_S13_N; 1.
DR Pfam; PF00312; Ribosomal_S15; 1.
DR SMART; SM01386; Ribosomal_S13_N; 1.
DR SMART; SM01387; Ribosomal_S15; 1.
DR SUPFAM; SSF47060; SSF47060; 1.
DR PROSITE; PS00362; RIBOSOMAL_S15; 1.
PE 1: Evidence at protein level;
KW Acetylation; Direct protein sequencing; Isopeptide bond; Phosphoprotein;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein; Ubl conjugation.
FT CHAIN 1..151
FT /note="40S ribosomal protein S13"
FT /id="PRO_0000115664"
FT MOD_RES 27
FT /note="N6-acetyllysine; alternate"
FT /evidence="ECO:0000250|UniProtKB:P62277"
FT MOD_RES 27
FT /note="N6-succinyllysine; alternate"
FT /evidence="ECO:0000250|UniProtKB:P62301"
FT MOD_RES 30
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:P62277"
FT MOD_RES 34
FT /note="N6-succinyllysine"
FT /evidence="ECO:0000250|UniProtKB:P62301"
FT MOD_RES 38
FT /note="Phosphotyrosine"
FT /evidence="ECO:0000250|UniProtKB:P62277"
FT CROSSLNK 43
FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT G-Cter in SUMO2)"
FT /evidence="ECO:0000250|UniProtKB:P62277"
SQ SEQUENCE 151 AA; 17222 MW; 23F94D38F87B8D53 CRC64;
MGRMHAPGKG LSQSALPYRR SVPTWLKLTS DDVKEQIYKL AKKGLTPSQI GVILRDSHGV
AQVRFVTGNK ILRILKSKGL APDLPEDLYH LIKKAVAVRK HLERNRKDKD AKFRLILIES
RIHRLARYYK TKRVLPPNWK YESSTASALV A
