RS16B_ARATH
ID RS16B_ARATH Reviewed; 135 AA.
AC Q9LTS6; Q8LDI6;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 135.
DE RecName: Full=30S ribosomal protein S16-2, chloroplastic/mitochondrial {ECO:0000303|PubMed:18453549};
DE Flags: Precursor;
GN Name=RPS16-2 {ECO:0000303|PubMed:18453549};
GN Synonyms=S16-1 {ECO:0000303|PubMed:16368778};
GN OrderedLocusNames=At5g56940 {ECO:0000312|Araport:AT5G56940};
GN ORFNames=MHM17.5 {ECO:0000312|EMBL:BAA97024.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP TISSUE SPECIFICITY.
RC STRAIN=cv. No-0;
RX PubMed=8811862; DOI=10.1046/j.1365-313x.1996.10030479.x;
RA Tsugeki R., Kochieva E.Z., Fedoroff N.V.;
RT "A transposon insertion in the Arabidopsis SSR16 gene causes an embryo-
RT defective lethal mutation.";
RL Plant J. 10:479-489(1996).
RN [6]
RP NOMENCLATURE, AND GENE FAMILY.
RX PubMed=16368778; DOI=10.1093/molbev/msj080;
RA Bonen L., Calixte S.;
RT "Comparative analysis of bacterial-origin genes for plant mitochondrial
RT ribosomal proteins.";
RL Mol. Biol. Evol. 23:701-712(2006).
RN [7]
RP SUBCELLULAR LOCATION, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=18453549; DOI=10.1093/molbev/msn102;
RA Ueda M., Nishikawa T., Fujimoto M., Takanashi H., Arimura S., Tsutsumi N.,
RA Kadowaki K.;
RT "Substitution of the gene for chloroplast RPS16 was assisted by generation
RT of a dual targeting signal.";
RL Mol. Biol. Evol. 25:1566-1575(2008).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:18453549}.
CC Plastid, chloroplast {ECO:0000269|PubMed:18453549}.
CC -!- TISSUE SPECIFICITY: Expressed at low levels in flowers, and, to a lower
CC extent, in leaves, stems and roots. {ECO:0000269|PubMed:8811862}.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bS16 family.
CC {ECO:0000305}.
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DR EMBL; AB024035; BAA97024.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96825.1; -; Genomic_DNA.
DR EMBL; AY034927; AAK59434.1; -; mRNA.
DR EMBL; AY059147; AAL15253.1; -; mRNA.
DR EMBL; AY085989; AAM63199.1; -; mRNA.
DR RefSeq; NP_200504.1; NM_125076.4.
DR PDB; 6XYW; EM; 3.86 A; Bo=1-135.
DR PDBsum; 6XYW; -.
DR AlphaFoldDB; Q9LTS6; -.
DR SMR; Q9LTS6; -.
DR IntAct; Q9LTS6; 1.
DR STRING; 3702.AT5G56940.1; -.
DR PaxDb; Q9LTS6; -.
DR PRIDE; Q9LTS6; -.
DR ProteomicsDB; 226718; -.
DR EnsemblPlants; AT5G56940.1; AT5G56940.1; AT5G56940.
DR GeneID; 835796; -.
DR Gramene; AT5G56940.1; AT5G56940.1; AT5G56940.
DR KEGG; ath:AT5G56940; -.
DR Araport; AT5G56940; -.
DR TAIR; locus:2164585; AT5G56940.
DR eggNOG; KOG3419; Eukaryota.
DR HOGENOM; CLU_100590_2_0_1; -.
DR InParanoid; Q9LTS6; -.
DR OMA; HMSEPAA; -.
DR OrthoDB; 1630052at2759; -.
DR PhylomeDB; Q9LTS6; -.
DR PRO; PR:Q9LTS6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LTS6; baseline and differential.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0009536; C:plastid; IDA:TAIR.
DR GO; GO:0015935; C:small ribosomal subunit; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 3.30.1320.10; -; 1.
DR HAMAP; MF_00385; Ribosomal_S16; 1.
DR InterPro; IPR000307; Ribosomal_S16.
DR InterPro; IPR023803; Ribosomal_S16_dom_sf.
DR PANTHER; PTHR12919; PTHR12919; 1.
DR Pfam; PF00886; Ribosomal_S16; 1.
DR SUPFAM; SSF54565; SSF54565; 1.
DR TIGRFAMs; TIGR00002; S16; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Chloroplast; Mitochondrion; Plastid; Reference proteome;
KW Ribonucleoprotein; Ribosomal protein; Transit peptide.
FT TRANSIT 1..7
FT /note="Chloroplast and mitochondrion"
FT /evidence="ECO:0000305|PubMed:18453549"
FT CHAIN 8..135
FT /note="30S ribosomal protein S16-2,
FT chloroplastic/mitochondrial"
FT /id="PRO_0000436965"
FT REGION 87..135
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 121..135
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 130..134
FT /note="TEAKS -> SEDKI (in Ref. 4; AAM63199)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 135 AA; 15101 MW; 5F6B4BF7DF0F696C CRC64;
MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK
YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT RPVDPMTGRY VDAENKTVNA
NDNQPKEEDT EAKSA
