RS16_ORYSJ
ID RS16_ORYSJ Reviewed; 149 AA.
AC Q0IQF7; B7E333; P46294; Q2QYC7;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=40S ribosomal protein S16;
GN Name=RPS16A; OrderedLocusNames=Os11g0127900, LOC_Os11g03400;
GN ORFNames=OsJ_031480;
GN and
GN Name=RPS16B; OrderedLocusNames=Os12g0124200, LOC_Os12g03090;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Cytoplasm.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS9 family.
CC {ECO:0000305}.
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DR EMBL; DP000010; ABA91285.1; -; Genomic_DNA.
DR EMBL; DP000011; ABA95713.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF27477.1; -; Genomic_DNA.
DR EMBL; AP008218; BAF29058.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT12491.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT15680.1; -; Genomic_DNA.
DR EMBL; CM000148; EAZ17271.1; -; Genomic_DNA.
DR EMBL; AK058697; BAG86780.1; -; mRNA.
DR EMBL; AK059550; BAG87028.1; -; mRNA.
DR EMBL; AK121503; BAH00522.1; -; mRNA.
DR RefSeq; XP_015617880.1; XM_015762394.1.
DR RefSeq; XP_015620704.1; XM_015765218.1.
DR AlphaFoldDB; Q0IQF7; -.
DR SMR; Q0IQF7; -.
DR STRING; 4530.OS11T0127900-01; -.
DR CarbonylDB; Q0IQF7; -.
DR PaxDb; Q0IQF7; -.
DR PRIDE; Q0IQF7; -.
DR EnsemblPlants; Os11t0127900-01; Os11t0127900-01; Os11g0127900.
DR EnsemblPlants; Os12t0124200-01; Os12t0124200-01; Os12g0124200.
DR GeneID; 4349653; -.
DR GeneID; 4351374; -.
DR Gramene; Os11t0127900-01; Os11t0127900-01; Os11g0127900.
DR Gramene; Os12t0124200-01; Os12t0124200-01; Os12g0124200.
DR KEGG; osa:4349653; -.
DR KEGG; osa:4351374; -.
DR eggNOG; KOG1753; Eukaryota.
DR HOGENOM; CLU_046483_4_0_1; -.
DR InParanoid; Q0IQF7; -.
DR OMA; FMGQAEA; -.
DR OrthoDB; 1347615at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000007752; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q0IQF7; OS.
DR GO; GO:0022627; C:cytosolic small ribosomal subunit; IBA:GO_Central.
DR GO; GO:0015935; C:small ribosomal subunit; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0000462; P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 3.30.230.10; -; 1.
DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold.
DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr.
DR InterPro; IPR000754; Ribosomal_S9.
DR InterPro; IPR020574; Ribosomal_S9_CS.
DR PANTHER; PTHR21569; PTHR21569; 1.
DR Pfam; PF00380; Ribosomal_S9; 1.
DR SUPFAM; SSF54211; SSF54211; 1.
DR PROSITE; PS00360; RIBOSOMAL_S9; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..149
FT /note="40S ribosomal protein S16"
FT /id="PRO_0000111493"
SQ SEQUENCE 149 AA; 16819 MW; C4AE2E47E3A6725E CRC64;
MAAALTRPPP GTVQCFGRKK TAVAVSYCKP GRGLIKVNGV PIELIRPEML RLKAFEPILL
AGRSRFKDID MRIRVRGGGK TSQIYAIRQA IAKALVAYYQ KYVDEASKKE VKDIFARYDR
TLLVADPRRC EPKKFGGRGA RARFQKSYR
