RS172_ARATH
ID RS172_ARATH Reviewed; 140 AA.
AC Q9SJ36; Q94K44;
DT 19-DEC-2001, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 3.
DT 25-MAY-2022, entry version 146.
DE RecName: Full=40S ribosomal protein S17-2;
GN Name=RPS17B; OrderedLocusNames=At2g05220; ORFNames=F5G3.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eS17 family.
CC {ECO:0000305}.
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DR EMBL; AC007018; AAD29060.2; -; Genomic_DNA.
DR EMBL; CP002685; AEC05907.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC05908.1; -; Genomic_DNA.
DR EMBL; AF370312; AAK44127.1; -; mRNA.
DR EMBL; AY063098; AAL34272.1; -; mRNA.
DR EMBL; BT002068; AAN72079.1; -; mRNA.
DR EMBL; BT006533; AAP21341.1; -; mRNA.
DR PIR; B84466; B84466.
DR RefSeq; NP_001031325.1; NM_001036248.1.
DR RefSeq; NP_565320.1; NM_126548.5.
DR AlphaFoldDB; Q9SJ36; -.
DR SMR; Q9SJ36; -.
DR BioGRID; 470; 46.
DR STRING; 3702.AT2G05220.2; -.
DR PaxDb; Q9SJ36; -.
DR PRIDE; Q9SJ36; -.
DR ProteomicsDB; 226864; -.
DR EnsemblPlants; AT2G05220.1; AT2G05220.1; AT2G05220.
DR EnsemblPlants; AT2G05220.2; AT2G05220.2; AT2G05220.
DR GeneID; 815070; -.
DR Gramene; AT2G05220.1; AT2G05220.1; AT2G05220.
DR Gramene; AT2G05220.2; AT2G05220.2; AT2G05220.
DR KEGG; ath:AT2G05220; -.
DR Araport; AT2G05220; -.
DR TAIR; locus:2051229; AT2G05220.
DR eggNOG; KOG0187; Eukaryota.
DR HOGENOM; CLU_112958_2_0_1; -.
DR InParanoid; Q9SJ36; -.
DR OMA; ERRDNYQ; -.
DR OrthoDB; 1459807at2759; -.
DR PhylomeDB; Q9SJ36; -.
DR PRO; PR:Q9SJ36; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SJ36; baseline and differential.
DR Genevisible; Q9SJ36; AT.
DR GO; GO:0022627; C:cytosolic small ribosomal subunit; HDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 1.10.60.20; -; 1.
DR HAMAP; MF_00511; Ribosomal_S17e; 1.
DR InterPro; IPR001210; Ribosomal_S17e.
DR InterPro; IPR018273; Ribosomal_S17e_CS.
DR InterPro; IPR036401; RPS17e-like_sf.
DR PANTHER; PTHR10732; PTHR10732; 1.
DR Pfam; PF00833; Ribosomal_S17e; 1.
DR SUPFAM; SSF116820; SSF116820; 1.
DR PROSITE; PS00712; RIBOSOMAL_S17E; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..140
FT /note="40S ribosomal protein S17-2"
FT /id="PRO_0000141539"
SQ SEQUENCE 140 AA; 15952 MW; B247AC6F9983E27F CRC64;
MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR
IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK ETLEMLASLG MSDTSGISAV
EPQQAMAPIA AFGGRAPRRY