RS201_ARATH
ID RS201_ARATH Reviewed; 124 AA.
AC P49200; Q42168; Q9FPI1; Q9LDG8;
DT 01-FEB-1996, integrated into UniProtKB/Swiss-Prot.
DT 20-JUN-2002, sequence version 2.
DT 25-MAY-2022, entry version 156.
DE RecName: Full=40S ribosomal protein S20-1;
GN Name=RPS20A; OrderedLocusNames=At3g45030; ORFNames=F14D17_100;
GN and
GN Name=RPS20C; OrderedLocusNames=At5g62300; ORFNames=MMI9.13, MMI9_120;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT3G45030).
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT5G62300).
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT3G45030 AND AT5G62300).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT5G62300).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia; TISSUE=Dry seed, and Seedling;
RX PubMed=8580968; DOI=10.1046/j.1365-313x.1996.09010101.x;
RA Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C.,
RA Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R.,
RA Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J.,
RA Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D.,
RA Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P.,
RA Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.;
RT "Further progress towards a catalogue of all Arabidopsis genes: analysis of
RT a set of 5000 non-redundant ESTs.";
RL Plant J. 9:101-124(1996).
RN [7]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS10 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA97194.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB89318.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AL353992; CAB89318.1; ALT_INIT; Genomic_DNA.
DR EMBL; AB019235; BAA97194.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002686; AEE77981.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97593.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97594.1; -; Genomic_DNA.
DR EMBL; AF325017; AAG40369.1; -; mRNA.
DR EMBL; AF370460; AAK43837.1; -; mRNA.
DR EMBL; AY096646; AAM20143.1; -; mRNA.
DR EMBL; AY114024; AAM45072.1; -; mRNA.
DR EMBL; AY085673; AAM62892.1; -; mRNA.
DR EMBL; Z27060; CAA81578.1; -; mRNA.
DR EMBL; Z26188; CAA81186.1; -; mRNA.
DR EMBL; Z26558; CAA81329.1; -; mRNA.
DR RefSeq; NP_001078781.1; NM_001085312.1.
DR RefSeq; NP_190089.2; NM_114372.6.
DR RefSeq; NP_201036.1; NM_125624.4.
DR AlphaFoldDB; P49200; -.
DR SMR; P49200; -.
DR BioGRID; 21595; 13.
DR BioGRID; 8958; 10.
DR STRING; 3702.AT3G45030.1; -.
DR MetOSite; P49200; -.
DR PaxDb; P49200; -.
DR PRIDE; P49200; -.
DR ProteomicsDB; 237027; -.
DR EnsemblPlants; AT3G45030.1; AT3G45030.1; AT3G45030.
DR EnsemblPlants; AT5G62300.1; AT5G62300.1; AT5G62300.
DR EnsemblPlants; AT5G62300.2; AT5G62300.2; AT5G62300.
DR GeneID; 823638; -.
DR GeneID; 836351; -.
DR Gramene; AT3G45030.1; AT3G45030.1; AT3G45030.
DR Gramene; AT5G62300.1; AT5G62300.1; AT5G62300.
DR Gramene; AT5G62300.2; AT5G62300.2; AT5G62300.
DR KEGG; ath:AT3G45030; -.
DR KEGG; ath:AT5G62300; -.
DR Araport; AT3G45030; -.
DR Araport; AT5G62300; -.
DR TAIR; locus:2075949; AT3G45030.
DR TAIR; locus:2167938; AT5G62300.
DR eggNOG; KOG0900; Eukaryota.
DR HOGENOM; CLU_122625_0_0_1; -.
DR InParanoid; P49200; -.
DR OMA; DAPKIHK; -.
DR OrthoDB; 1454256at2759; -.
DR PhylomeDB; P49200; -.
DR PRO; PR:P49200; -.
DR Proteomes; UP000006548; Chromosome 3.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; P49200; baseline and differential.
DR Genevisible; P49200; AT.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0022627; C:cytosolic small ribosomal subunit; HDA:TAIR.
DR GO; GO:0009505; C:plant-type cell wall; HDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0015935; C:small ribosomal subunit; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 3.30.70.600; -; 1.
DR HAMAP; MF_00508; Ribosomal_S10; 1.
DR InterPro; IPR001848; Ribosomal_S10.
DR InterPro; IPR018268; Ribosomal_S10_CS.
DR InterPro; IPR027486; Ribosomal_S10_dom.
DR InterPro; IPR036838; Ribosomal_S10_dom_sf.
DR InterPro; IPR005729; Ribosomal_S10_euk/arc.
DR PANTHER; PTHR11700; PTHR11700; 1.
DR Pfam; PF00338; Ribosomal_S10; 1.
DR PRINTS; PR00971; RIBOSOMALS10.
DR SMART; SM01403; Ribosomal_S10; 1.
DR SUPFAM; SSF54999; SSF54999; 1.
DR TIGRFAMs; TIGR01046; uS10_euk_arch; 1.
DR PROSITE; PS00361; RIBOSOMAL_S10; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..124
FT /note="40S ribosomal protein S20-1"
FT /id="PRO_0000146688"
FT CONFLICT 25
FT /note="I -> L (in Ref. 6; CAA81578)"
FT /evidence="ECO:0000305"
FT CONFLICT 31
FT /note="S -> P (in Ref. 6; CAA81329)"
FT /evidence="ECO:0000305"
FT CONFLICT 35
FT /note="K -> N (in Ref. 6; CAA81186)"
FT /evidence="ECO:0000305"
FT CONFLICT 36
FT /note="N -> I (in Ref. 6; CAA81578)"
FT /evidence="ECO:0000305"
FT CONFLICT 45
FT /note="V -> A (in Ref. 6; CAA81578)"
FT /evidence="ECO:0000305"
FT CONFLICT 56
FT /note="K -> M (in Ref. 6; CAA81578)"
FT /evidence="ECO:0000305"
FT CONFLICT 77
FT /note="E -> D (in Ref. 6; CAA81578)"
FT /evidence="ECO:0000305"
FT CONFLICT 97..108
FT /note="FSSPDVVKQITS -> SALLMWSTRSV (in Ref. 6; CAA81186)"
FT /evidence="ECO:0000305"
FT CONFLICT 97
FT /note="F -> H (in Ref. 6; CAA81578)"
FT /evidence="ECO:0000305"
FT CONFLICT 108
FT /note="S -> P (in Ref. 6; CAA81578)"
FT /evidence="ECO:0000305"
FT CONFLICT 124
FT /note="S -> A (in Ref. 6; CAA81578)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 124 AA; 13878 MW; CBAA848100E1BFD2 CRC64;
MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD KRLRVKGPVR
MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP DVVKQITSIT IEPGVEVEVT
IADS
