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ABCA4_BOVIN
ID   ABCA4_BOVIN             Reviewed;        2281 AA.
AC   F1MWM0; O02698;
DT   29-SEP-2021, integrated into UniProtKB/Swiss-Prot.
DT   16-NOV-2011, sequence version 2.
DT   03-AUG-2022, entry version 76.
DE   RecName: Full=Retinal-specific phospholipid-transporting ATPase ABCA4 {ECO:0000250|UniProtKB:P78363};
DE            EC=7.6.2.1 {ECO:0000250|UniProtKB:P78363};
DE   AltName: Full=ATP-binding cassette sub-family A member 4;
DE   AltName: Full=RIM ABC transporter;
DE            Short=RIM protein {ECO:0000303|PubMed:9092582, ECO:0000303|PubMed:9202155};
DE            Short=RmP {ECO:0000303|PubMed:9092582, ECO:0000303|PubMed:9202155};
DE   AltName: Full=Retinal-specific ATP-binding cassette transporter;
GN   Name=ABCA4 {ECO:0000250|UniProtKB:P78363};
GN   Synonyms=ABCR {ECO:0000250|UniProtKB:P78363};
OS   Bos taurus (Bovine).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
OX   NCBI_TaxID=9913;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], PARTIAL PROTEIN SEQUENCE, SUBCELLULAR LOCATION,
RP   GLYCOSYLATION, TISSUE SPECIFICITY, SITE, AND PROTEOLYTIC CLEAVAGE.
RC   TISSUE=Retinal rod cell;
RX   PubMed=9092582; DOI=10.1074/jbc.272.15.10303;
RA   Illing M., Molday L.L., Molday R.S.;
RT   "The 220-kDa rim protein of retinal rod outer segments is a member of the
RT   ABC transporter superfamily.";
RL   J. Biol. Chem. 272:10303-10310(1997).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Hereford;
RX   PubMed=19393038; DOI=10.1186/gb-2009-10-4-r42;
RA   Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C., Puiu D.,
RA   Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S., Marcais G.,
RA   Roberts M., Subramanian P., Yorke J.A., Salzberg S.L.;
RT   "A whole-genome assembly of the domestic cow, Bos taurus.";
RL   Genome Biol. 10:R42.01-R42.10(2009).
RN   [3]
RP   PROTEIN SEQUENCE OF 1-16, SUBCELLULAR LOCATION, GLYCOSYLATION, AND TISSUE
RP   SPECIFICITY.
RX   PubMed=9202155; DOI=10.1016/s0014-5793(97)00517-6;
RA   Azarian S.M., Travis G.H.;
RT   "The photoreceptor rim protein is an ABC transporter encoded by the gene
RT   for recessive Stargardt's disease (ABCR).";
RL   FEBS Lett. 409:247-252(1997).
RN   [4]
RP   SUBCELLULAR LOCATION.
RX   PubMed=9288089; DOI=10.1038/ng0997-15;
RA   Sun H., Nathans J.;
RT   "Stargardt's ABCR is localized to the disc membrane of retinal rod outer
RT   segments.";
RL   Nat. Genet. 17:15-16(1997).
RN   [5]
RP   FUNCTION, AND BIOPHYSICOCHEMICAL PROPERTIES.
RX   PubMed=10075733; DOI=10.1074/jbc.274.12.8269;
RA   Sun H., Molday R.S., Nathans J.;
RT   "Retinal stimulates ATP hydrolysis by purified and reconstituted ABCR, the
RT   photoreceptor-specific ATP-binding cassette transporter responsible for
RT   Stargardt disease.";
RL   J. Biol. Chem. 274:8269-8281(1999).
RN   [6]
RP   FUNCTION, AND BIOPHYSICOCHEMICAL PROPERTIES.
RX   PubMed=10767284; DOI=10.1074/jbc.m000555200;
RA   Ahn J., Wong J.T., Molday R.S.;
RT   "The effect of lipid environment and retinoids on the ATPase activity of
RT   ABCR, the photoreceptor ABC transporter responsible for Stargardt macular
RT   dystrophy.";
RL   J. Biol. Chem. 275:20399-20405(2000).
RN   [7]
RP   PROTEOLYTIC CLEAVAGE, AND GLYCOSYLATION.
RX   PubMed=11320094; DOI=10.1074/jbc.m101902200;
RA   Bungert S., Molday L.L., Molday R.S.;
RT   "Membrane topology of the ATP binding cassette transporter ABCR and its
RT   relationship to ABC1 and related ABCA transporters: identification of N-
RT   linked glycosylation sites.";
RL   J. Biol. Chem. 276:23539-23546(2001).
RN   [8]
RP   FUNCTION.
RX   PubMed=15471866; DOI=10.1074/jbc.m405216200;
RA   Beharry S., Zhong M., Molday R.S.;
RT   "N-retinylidene-phosphatidylethanolamine is the preferred retinoid
RT   substrate for the photoreceptor-specific ABC transporter ABCA4 (ABCR).";
RL   J. Biol. Chem. 279:53972-53979(2004).
RN   [9]
RP   FUNCTION.
RX   PubMed=20552428; DOI=10.1007/978-1-60327-325-1_9;
RA   Zhong M., Molday R.S.;
RT   "Binding of retinoids to ABCA4, the photoreceptor ABC transporter
RT   associated with Stargardt macular degeneration.";
RL   Methods Mol. Biol. 652:163-176(2010).
RN   [10]
RP   IDENTIFICATION BY MASS SPECTROMETRY, GLYCOSYLATION AT ASN-415; ASN-504;
RP   ASN-1455; ASN-1527; ASN-1586 AND ASN-1660, PHOSPHORYLATION AT THR-901;
RP   SER-1185; THR-1313; SER-1317 AND SER-1319, MUTAGENESIS OF THR-901;
RP   SER-1185; THR-1313 AND SER-1317, AND SUBCELLULAR LOCATION.
RX   PubMed=21721517; DOI=10.1021/bi200774w;
RA   Tsybovsky Y., Wang B., Quazi F., Molday R.S., Palczewski K.;
RT   "Posttranslational modifications of the photoreceptor-specific ABC
RT   transporter ABCA4.";
RL   Biochemistry 50:6855-6866(2011).
RN   [11]
RP   FUNCTION, CATALYTIC ACTIVITY, ACTIVITY REGULATION, AND BIOPHYSICOCHEMICAL
RP   PROPERTIES.
RX   PubMed=22735453; DOI=10.1038/ncomms1927;
RA   Quazi F., Lenevich S., Molday R.S.;
RT   "ABCA4 is an N-retinylidene-phosphatidylethanolamine and
RT   phosphatidylethanolamine importer.";
RL   Nat. Commun. 3:925-925(2012).
RN   [12]
RP   FUNCTION, AND CATALYTIC ACTIVITY.
RX   PubMed=24707049; DOI=10.1073/pnas.1400780111;
RA   Quazi F., Molday R.S.;
RT   "ATP-binding cassette transporter ABCA4 and chemical isomerization protect
RT   photoreceptor cells from the toxic accumulation of excess 11-cis-retinal.";
RL   Proc. Natl. Acad. Sci. U.S.A. 111:5024-5029(2014).
CC   -!- FUNCTION: Flippase that catalyzes in an ATP-dependent manner the
CC       transport of retinal-phosphatidylethanolamine conjugates like the 11-
CC       cis and all-trans isomers of N-retinylidene-phosphatidylethanolamine
CC       from the lumen to the cytoplasmic leaflet of photoreceptor outer
CC       segment disk membranes, where N-cis-retinylidene-
CC       phosphatidylethanolamine (N-cis-R-PE) is then isomerized to its all-
CC       trans isomer (N-trans-R-PE) and reduced by RDH8 to produce all-trans-
CC       retinol (all-trans-rol) and therefore prevents the accumulation of
CC       excess of 11-cis-retinal and its schiff-base conjugate and the
CC       formation of toxic bisretinoid (PubMed:22735453, PubMed:20552428,
CC       PubMed:10075733, PubMed:10767284, PubMed:24707049). Displays both
CC       ATPase and GTPase activity that is strongly influenced by the lipid
CC       environment and the presence of retinoid compounds (PubMed:10767284).
CC       Binds the unprotonated form of N-retinylidene-phosphatidylethanolamine
CC       with high affinity in the absence of ATP and ATP binding and hydrolysis
CC       induce a protein conformational change that causes the dissociation of
CC       N-retinylidene-phosphatidylethanolamine (PubMed:15471866,
CC       PubMed:20552428, PubMed:22735453). {ECO:0000269|PubMed:10075733,
CC       ECO:0000269|PubMed:10767284, ECO:0000269|PubMed:15471866,
CC       ECO:0000269|PubMed:20552428, ECO:0000269|PubMed:22735453,
CC       ECO:0000269|PubMed:24707049}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O + phospholipidSide 1 = ADP + phosphate +
CC         phospholipidSide 2.; EC=7.6.2.1;
CC         Evidence={ECO:0000269|PubMed:22735453};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O + N-all-trans-
CC         retinylidenephosphatidylethanolamine(out) = ADP + H(+) + N-all-trans-
CC         retinylidenephosphatidylethanolamine(in) + phosphate;
CC         Xref=Rhea:RHEA:67188, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
CC         ChEBI:CHEBI:30616, ChEBI:CHEBI:43474, ChEBI:CHEBI:167884,
CC         ChEBI:CHEBI:456216; Evidence={ECO:0000269|PubMed:22735453,
CC         ECO:0000269|PubMed:24707049};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:67189;
CC         Evidence={ECO:0000305|PubMed:22735453};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(out) + ATP + H2O
CC         = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(in) + ADP + H(+) +
CC         phosphate; Xref=Rhea:RHEA:66132, ChEBI:CHEBI:15377,
CC         ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, ChEBI:CHEBI:43474,
CC         ChEBI:CHEBI:64612, ChEBI:CHEBI:456216;
CC         Evidence={ECO:0000269|PubMed:22735453};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:66133;
CC         Evidence={ECO:0000305|PubMed:22735453};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O + N-11-cis-retinylidenephosphatidylethanolamine(out)
CC         = ADP + H(+) + N-11-cis-retinylidenephosphatidylethanolamine(in) +
CC         phosphate; Xref=Rhea:RHEA:67192, ChEBI:CHEBI:15377,
CC         ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, ChEBI:CHEBI:43474,
CC         ChEBI:CHEBI:167887, ChEBI:CHEBI:456216;
CC         Evidence={ECO:0000269|PubMed:24707049};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:67193;
CC         Evidence={ECO:0000305|PubMed:24707049};
CC   -!- ACTIVITY REGULATION: All-trans-retinal transport activity is reduced by
CC       EDTA chelation of Mg2+ (PubMed:22735453). All-trans-retinal transport
CC       activity is inhibited by N-ethylmaleimide (NEM) (PubMed:22735453).
CC       Phosphatidylethanolamine transport is strongly inhibited by beryllium
CC       fluoride and NEM (PubMed:22735453). {ECO:0000269|PubMed:22735453}.
CC   -!- BIOPHYSICOCHEMICAL PROPERTIES:
CC       Kinetic parameters:
CC         KM=278 uM for ATP (with a purified ABCA4)
CC         {ECO:0000269|PubMed:10075733};
CC         KM=33 uM for ATP (with ABCA4 reconstituted into brain lipid membrane)
CC         {ECO:0000269|PubMed:10075733};
CC         KM=725 uM for ATP (reconstituted into brain lipid membrane, plus 80
CC         uM all-trans-retinal) {ECO:0000269|PubMed:10075733};
CC         KM=18 uM for ATP (with amiodarone) {ECO:0000269|PubMed:10075733};
CC         KM=400 uM for ATP (with all-trans-retinal)
CC         {ECO:0000269|PubMed:10075733};
CC         KM=666 uM for ATP (with all-trans-retinal plus amiodarone)
CC         {ECO:0000269|PubMed:10075733};
CC         KM=75 uM for ATP (with CHAPS-solubilized ABCA4)
CC         {ECO:0000269|PubMed:10767284};
CC         KM=32 uM for ATP (with ABCA4 reconstituted into soybean phospholipid)
CC         {ECO:0000269|PubMed:10767284};
CC         KM=20 uM for ATP (with ABCA4 reconstituted into brain polar lipid)
CC         {ECO:0000269|PubMed:10767284};
CC         KM=25 uM for ATP (with ABCA4 reconstituted into ROS phospholipid)
CC         {ECO:0000269|PubMed:10767284};
CC         KM=112 uM for ATP (with CHAPS-solubilized ABCA4 and 60 uM all-trans-
CC         retinal) {ECO:0000269|PubMed:10767284};
CC         KM=56 uM for ATP (with ABCA4 reconstituted into soybean phospholipid
CC         and 60 uM all-trans-retinal) {ECO:0000269|PubMed:10767284};
CC         KM=106 uM for ATP (with ABCA4 reconstituted into brain polar lipid
CC         and 60 uM all-trans-retinal) {ECO:0000269|PubMed:10767284};
CC         KM=75 uM for ATP (with ABCA4 reconstituted into ROS phospholipid and
CC         60 uM all-trans-retinal) {ECO:0000269|PubMed:10767284};
CC         KM=0.02 mM for ATP (in the presence of 40 uM retinal)
CC         {ECO:0000269|PubMed:24707049};
CC         Vmax=27 nmol/min/mg enzyme (for ATP hydrolysis and with a purified
CC         ABCA4) {ECO:0000269|PubMed:10075733};
CC         Vmax=1.3 nmol/min/mg enzyme (for ATP hydrolysis and with ABCA4
CC         reconstituted into brain lipid membrane)
CC         {ECO:0000269|PubMed:10075733};
CC         Vmax=29 nmol/min/mg enzyme (for ATP hydrolysis and with ABCA4
CC         reconstituted into brain lipid membrane, plus 80 uM all-trans-
CC         retinal) {ECO:0000269|PubMed:10075733};
CC         Vmax=2 nmol/min/mg enzyme (for ATP hydrolysis and with amiodarone as
CC         substrate) {ECO:0000269|PubMed:10075733};
CC         Vmax=20 nmol/min/mg enzyme (for ATP hydrolysis and with all-trans-
CC         retinal as substrate) {ECO:0000269|PubMed:10075733};
CC         Vmax=50 nmol/min/mg enzyme (for ATP hydrolysis and with all-trans-
CC         retinal and amiodarone as substrates) {ECO:0000269|PubMed:10075733};
CC         Vmax=190 nmol/min/mg enzyme (for ATP hydrolysis and with CHAPS-
CC         solubilized ABCA4) {ECO:0000269|PubMed:10767284};
CC         Vmax=50 nmol/min/mg enzyme (for ATP hydrolysis and with ABCA4
CC         reconstituted into soybean phospholipid)
CC         {ECO:0000269|PubMed:10767284};
CC         Vmax=29 nmol/min/mg enzyme (for ATP hydrolysis and with ABCA4
CC         reconstituted into brain polar lipid) {ECO:0000269|PubMed:10767284};
CC         Vmax=202 nmol/min/mg enzyme (for ATP hydrolysis and with ABCA4
CC         reconstituted into ROS phospholipid) {ECO:0000269|PubMed:10767284};
CC         Vmax=402 nmol/min/mg enzyme (for ATP hydrolysis and with CHAPS-
CC         solubilized ABCA4 and 60 uM all-trans-retinal)
CC         {ECO:0000269|PubMed:10767284};
CC         Vmax=110 nmol/min/mg enzyme (for ATP hydrolysis and with ABCA4
CC         reconstituted into soybean phospholipid and 60 uM all-trans-retinal)
CC         {ECO:0000269|PubMed:10767284};
CC         Vmax=171 nmol/min/mg enzyme (for ATP hydrolysis and with ABCA4
CC         reconstituted into brain polar lipid and 60 uM all-trans-retinal)
CC         {ECO:0000269|PubMed:10767284};
CC         Vmax=673 nmol/min/mg enzyme (for ATP hydrolysis and with ABCA4
CC         reconstituted into ROS phospholipid and 60 uM all-trans-retinal)
CC         {ECO:0000269|PubMed:10767284};
CC         Vmax=35.5 pmol/min/ug enzyme toward all-trans-retinal (in liposome)
CC         {ECO:0000269|PubMed:22735453};
CC         Vmax=4.9 nmol/min/mg enzyme towards all-trans-retinal (in rod outer
CC         segments) {ECO:0000269|PubMed:22735453};
CC       pH dependence:
CC         Optimum pH is 8. {ECO:0000269|PubMed:22735453};
CC   -!- INTERACTION:
CC       F1MWM0; Q28181: CNGB1; NbExp=3; IntAct=EBI-7079806, EBI-6979031;
CC   -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC       protein {ECO:0000255}. Cell projection, cilium, photoreceptor outer
CC       segment {ECO:0000269|PubMed:9092582, ECO:0000269|PubMed:9202155,
CC       ECO:0000269|PubMed:9288089}. Cytoplasmic vesicle
CC       {ECO:0000269|PubMed:21721517}. Endoplasmic reticulum
CC       {ECO:0000250|UniProtKB:P78363}. Note=Localized to the rim and incisures
CC       of rod outer segments disks. {ECO:0000269|PubMed:9092582,
CC       ECO:0000269|PubMed:9288089}.
CC   -!- TISSUE SPECIFICITY: Expressed in retina namely in the periphery and
CC       incisures of the rod outer segments (ROS). {ECO:0000269|PubMed:9092582,
CC       ECO:0000269|PubMed:9202155}.
CC   -!- DOMAIN: The second extracellular domain (ECD2, aa 1395-1680) undergoes
CC       conformational change in response to its specific interaction with its
CC       substrate all-trans-retinal. Nucleotide binding domain 1 (NBD1, aa 854-
CC       1375) binds preferentially and with high affinity with the 11-cis
CC       retinal. {ECO:0000250|UniProtKB:P78363}.
CC   -!- PTM: N-glycosylated. {ECO:0000269|PubMed:11320094,
CC       ECO:0000269|PubMed:9092582, ECO:0000269|PubMed:9202155}.
CC   -!- PTM: Proteolytic cleavage by trypsin leads to a 120-kDa N-terminal
CC       fragment and a 115-kDa C-terminal fragment that are linked through
CC       disulfide bonds. {ECO:0000269|PubMed:11320094,
CC       ECO:0000269|PubMed:9092582}.
CC   -!- PTM: Phosphorylation is independent of light exposure and modulates
CC       ATPase activity. {ECO:0000269|PubMed:21721517}.
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DR   EMBL; U90126; AAC48716.1; -; mRNA.
DR   EMBL; DAAA02007872; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; NP_776646.1; NM_174221.2.
DR   SMR; F1MWM0; -.
DR   IntAct; F1MWM0; 1.
DR   MINT; F1MWM0; -.
DR   STRING; 9913.ENSBTAP00000023982; -.
DR   GlyConnect; 812; 12 N-Linked glycans (6 sites).
DR   PaxDb; F1MWM0; -.
DR   Ensembl; ENSBTAT00000023982; ENSBTAP00000023982; ENSBTAG00000018010.
DR   GeneID; 281584; -.
DR   KEGG; bta:281584; -.
DR   CTD; 24; -.
DR   VEuPathDB; HostDB:ENSBTAG00000018010; -.
DR   VGNC; VGNC:25458; ABCA4.
DR   eggNOG; KOG0059; Eukaryota.
DR   GeneTree; ENSGT00940000155624; -.
DR   HOGENOM; CLU_000604_19_0_1; -.
DR   InParanoid; F1MWM0; -.
DR   OMA; DPVYSYD; -.
DR   OrthoDB; 131191at2759; -.
DR   TreeFam; TF105191; -.
DR   Proteomes; UP000009136; Chromosome 3.
DR   Bgee; ENSBTAG00000018010; Expressed in retina and 16 other tissues.
DR   ExpressionAtlas; F1MWM0; baseline and differential.
DR   GO; GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.
DR   GO; GO:0005887; C:integral component of plasma membrane; IEA:InterPro.
DR   GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR   GO; GO:0001750; C:photoreceptor outer segment; IDA:UniProtKB.
DR   GO; GO:0120202; C:rod photoreceptor disc membrane; IDA:UniProtKB.
DR   GO; GO:0005502; F:11-cis retinal binding; ISS:UniProtKB.
DR   GO; GO:0140359; F:ABC-type transporter activity; IEA:InterPro.
DR   GO; GO:0005503; F:all-trans retinal binding; ISS:UniProtKB.
DR   GO; GO:0005524; F:ATP binding; IDA:UniProtKB.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IDA:UniProtKB.
DR   GO; GO:0140326; F:ATPase-coupled intramembrane lipid transporter activity; IBA:GO_Central.
DR   GO; GO:0042626; F:ATPase-coupled transmembrane transporter activity; IBA:GO_Central.
DR   GO; GO:0005525; F:GTP binding; IDA:UniProtKB.
DR   GO; GO:0003924; F:GTPase activity; IDA:UniProtKB.
DR   GO; GO:0005319; F:lipid transporter activity; IBA:GO_Central.
DR   GO; GO:0140347; F:N-retinylidene-phosphatidylethanolamine flippase activity; IDA:UniProtKB.
DR   GO; GO:0090555; F:phosphatidylethanolamine flippase activity; IEA:Ensembl.
DR   GO; GO:0005548; F:phospholipid transporter activity; IBA:GO_Central.
DR   GO; GO:0005501; F:retinoid binding; IDA:UniProtKB.
DR   GO; GO:0006869; P:lipid transport; IBA:GO_Central.
DR   GO; GO:0006649; P:phospholipid transfer to membrane; IEA:Ensembl.
DR   GO; GO:0045332; P:phospholipid translocation; IEA:Ensembl.
DR   GO; GO:0045494; P:photoreceptor cell maintenance; IEA:Ensembl.
DR   GO; GO:0042574; P:retinal metabolic process; IDA:UniProtKB.
DR   GO; GO:0001523; P:retinoid metabolic process; IDA:UniProtKB.
DR   GO; GO:0007601; P:visual perception; IEA:Ensembl.
DR   Gene3D; 3.40.50.300; -; 2.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR003439; ABC_transporter-like_ATP-bd.
DR   InterPro; IPR026082; ABCA.
DR   InterPro; IPR005951; ABCA4/ABCR.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   PANTHER; PTHR19229; PTHR19229; 1.
DR   Pfam; PF00005; ABC_tran; 2.
DR   SMART; SM00382; AAA; 2.
DR   SUPFAM; SSF52540; SSF52540; 2.
DR   TIGRFAMs; TIGR01257; rim_protein; 1.
DR   PROSITE; PS50893; ABC_TRANSPORTER_2; 2.
PE   1: Evidence at protein level;
KW   ATP-binding; Cell projection; Cytoplasmic vesicle;
KW   Direct protein sequencing; Disulfide bond; Endoplasmic reticulum;
KW   Glycoprotein; Membrane; Nucleotide-binding; Phosphoprotein;
KW   Reference proteome; Translocase; Transmembrane; Transmembrane helix.
FT   CHAIN           1..2281
FT                   /note="Retinal-specific phospholipid-transporting ATPase
FT                   ABCA4"
FT                   /id="PRO_0000453425"
FT   TOPO_DOM        1..24
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        25..45
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        46..646
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   TRANSMEM        647..667
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        668..699
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        700..720
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        721..730
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        731..751
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        752..759
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        760..780
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        781..835
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        836..856
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        857..1374
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        1375..1395
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        1396..1679
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   TRANSMEM        1680..1700
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        1701..1725
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        1726..1746
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        1747..1757
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        1758..1778
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        1779..1790
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        1791..1811
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        1812..1829
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        1830..1850
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        1851..1879
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        1880..1900
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        1901..2281
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000305"
FT   DOMAIN          929..1160
FT                   /note="ABC transporter 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
FT   DOMAIN          1936..2168
FT                   /note="ABC transporter 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
FT   REGION          1295..1340
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          2242..2247
FT                   /note="Essential for ATP binding and ATPase activity"
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   REGION          2262..2281
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   BINDING         963..970
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000250|UniProtKB:P78363,
FT                   ECO:0000255|PROSITE-ProRule:PRU00434"
FT   BINDING         1054
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   BINDING         1970..1978
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000250|UniProtKB:P78363,
FT                   ECO:0000255|PROSITE-ProRule:PRU00434"
FT   BINDING         2071..2072
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   SITE            1309
FT                   /note="Cleavage; by trypsin"
FT                   /evidence="ECO:0000269|PubMed:9092582"
FT   MOD_RES         901
FT                   /note="Phosphothreonine"
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   MOD_RES         1185
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   MOD_RES         1313
FT                   /note="Phosphothreonine"
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   MOD_RES         1317
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   MOD_RES         1319
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   CARBOHYD        98
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT   CARBOHYD        415
FT                   /note="N-linked (Hex...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498,
FT                   ECO:0000269|PubMed:21721517"
FT   CARBOHYD        504
FT                   /note="N-linked (Hex...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498,
FT                   ECO:0000269|PubMed:21721517"
FT   CARBOHYD        1455
FT                   /note="N-linked (Hex...) asparagine"
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   CARBOHYD        1527
FT                   /note="N-linked (Hex...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498,
FT                   ECO:0000269|PubMed:21721517"
FT   CARBOHYD        1586
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT   CARBOHYD        1660
FT                   /note="N-linked (Hex...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498,
FT                   ECO:0000269|PubMed:21721517"
FT   CARBOHYD        1817
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT   CARBOHYD        1931
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT   CARBOHYD        2004
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT   CARBOHYD        2050
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT   CARBOHYD        2251
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT   DISULFID        54..81
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   DISULFID        75..324
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   DISULFID        370..519
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   DISULFID        641..1488
FT                   /note="Interchain"
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   DISULFID        1442..1453
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   DISULFID        1486..1500
FT                   /evidence="ECO:0000250|UniProtKB:P78363"
FT   MUTAGEN         901
FT                   /note="T->A: Decreases expression level. Affects
FT                   subcellular location."
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   MUTAGEN         1185
FT                   /note="S->A: Does not affect subcellular location. Does not
FT                   affect expression level. Does not affect ATPase activity.
FT                   Reduces the stimulating effect of all-trans-retinal on ATP
FT                   hydrolysis."
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   MUTAGEN         1313
FT                   /note="T->A: Does not affect subcellular location. Does not
FT                   affect expression level. Does not affect ATPase activity.
FT                   Reduces the stimulating effect of all-trans-retinal on ATP
FT                   hydrolysis."
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   MUTAGEN         1317
FT                   /note="S->A: Does not affect subcellular location. Does not
FT                   affect expression level. Affects both the basal and
FT                   stimulated ATPase activity."
FT                   /evidence="ECO:0000269|PubMed:21721517"
FT   CONFLICT        1037
FT                   /note="K -> E (in Ref. 1; AAC48716)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1060
FT                   /note="Q -> R (in Ref. 1; AAC48716)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1322
FT                   /note="R -> G (in Ref. 1; AAC48716)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1420
FT                   /note="L -> P (in Ref. 1; AAC48716)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1858..1862
FT                   /note="RFGEE -> QFGEA (in Ref. 1; AAC48716)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        2118
FT                   /note="G -> E (in Ref. 1; AAC48716)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        2203
FT                   /note="M -> T (in Ref. 1; AAC48716)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        2262
FT                   /note="A -> T (in Ref. 1; AAC48716)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   2281 AA;  257376 MW;  26C8C84FB3CB243F CRC64;
     MGFARQIKLL LWKNWTLRKR QKIRFVVELV WPLSLFLVLI WLRNVNPLYS KHECHFPNKA
     MPSAGMLPWL QGIFCNVNNP CFQSPTAGES PGIVSNYNNS ILARVYRDFQ ELLMDAPESQ
     HLGQVWRELR TLSQLMNTLR MHPERIAGRG IRIREVLKDD EMLTLFLVKN IGLSDSVVYL
     LVNSQVRPEQ FARGVPDLML KDIACSEALL ERFLIFPQRR AAQTVRGSLC SLSQGTLQWM
     EDTLYANVDF FKLFHVFPRL LDSRSQGMNL RSWGRILSDM SPRIQEFIHR PSVQDLLWVT
     RPLVQTGGPE TFTQLMGILS DLLCGYPEGG GSRVFSFNWY EDNNYKAFLG IDSTRKDPIY
     SYDERTTTFC NALIQSLESN PLTKIAWRAA KPLLMGKILF TPDSPATRRI LKNANSTFEE
     LERVRKLVKV WEEVGPQIWY FFDKSTQMSM IRDTLENPTV KAFWNRQLGE EGITAEAVLN
     FLYNGPREGQ ADDVDNFNWR DIFNITDRAL RLANQYLECL ILDKFESYDD EFQLTQRALS
     LLEENRFWAG VVFPDMHPWT SSLPPHVKYK IRMDIDVVEK TNKIKDRYWD SGPRADPVED
     FRYIWGGFAY LQDMVEHGIT RSQAQEEVPV GIYLQQMPYP CFVDDSFMII LNRCFPIFMV
     LAWIYSVSMT VKSIVLEKEL RLKETLKNQG VSNRVIWCTW FLDSFSIMSM SICLLTIFIM
     HGRILHYSNP FILFLFLLAF SIATIMQCFL LSTFFSRASL AAACSGVIYF TLYLPHILCF
     AWQDRITADM KMAVSLLSPV AFGFGTEYLA RFEEQGVGLQ WSNIGNSPME GDEFSFLMSM
     KMMLLDAALY GLLAWYLDQV FPGDYGTPLP WYFLLQESYW LGGEGCSTRE ERALEKTEPI
     TEEMEDPEYP EGINDCFFER ELPGLVPGVC VKNLVKIFEP YGRPAVDRLN ITFYESQITA
     FLGHNGAGKT TTLSIMTGLL PPTSGTVLVG GKDIETNLDA IRQSLGMCPQ HNILFHHLTV
     AEHILFYAQL KGRSWDKAQL EMEAMLEDTG LHHKRNEEAQ DLSGGVQRKL SVAIAFVGDA
     KVVVLDEPTS GVDPYSRRSI WDLLLKYRSG RTIIMSTHHM DEADILGDRI AIISQGRLYC
     SGTPLFLKNC FGTGFYLTLV RRMKTIQSQG RGREATCSCA SKGFSVRCPA CAEAITPEQV
     LDGDVNELTD MVHHHVPEAK LVECIGQELI FLLPNKNFKQ RAYASLFREL EETLADLGLS
     SFGISDTPLE EIFLKVTEDL DSGHLFAGGT QQKRENINLR HPCSGPSEKA GQTPQGSSSH
     PREPAAHPEG QPPPEREGHS RLNSGARLIV QHVQALLVKR FQHTIRSHKD FLAQIVLPAT
     FVFLALMLSL IIPPFGEYPA LTLHPWMYGQ QYTFFSMDQL DSEWLSALAD VLVNKPGFGN
     RCLKEEWLPE FPCGNSSPWK TPSVSPDVTH LLQQQKWTAD QPSPSCRCST REKLTMLPEC
     PEGAGGLPPP QRIQRSTEIL QDLTDRNVSD FLVKTYPALI RSSLKSKFWV NEQRYGGISV
     GGKLPAPPFT GEALVGFLSD LGQLMNVSGG PMTREAAKEM PAFLKQLETE DNIKVWFNNK
     GWHALVSFLN VAHNAILRAS LHKDKNPEEY GITVISQPLN LTKEQLSEIT VLTTSVDAVV
     AICVIFAMSF VPASFVLYLI QERVNKAKHL QFVSGVSPTT YWLTNFLWDI MNYTVSAALV
     VGIFIGFQKK AYTSSENLPA LVALLMLYGW AVIPMMYPAS FLFDIPSTAY VALSCANLFI
     GINSSAITFV LELFENNRTL LRINAMLRKL LIIFPHFCLG RGLIDLALSQ AVTDVYARFG
     EEHSSNPFQW DLIGKNLAAM AVEGVVYFLL TLLIQYQFFF SRWTTEPAKE PITDEDDDVA
     EERQRIISGG NKTDILRLNE LTKVYSGTSS PAVDRLCVGV RPGECFGLLG VNGAGKTTTF
     KMLTGDTAVT SGDATVAGKS ILTNISDVHQ SMGYCPQFDA IDDLLTGREH LYLYARLRGV
     PAEEIERVTN WSIQSLGLSL YADRLAGTYS GGNKRKLSTA IALIGCPPLV LLDEPTTGMD
     PQARRMLWNT IMGIIREGRA VVLTSHSMEE CEALCTRLAI MVKGAFQCLG TIQHLKSKFG
     DGYIVTMKIR SPKDDLLPDL GPVEQFFQGN FPGSVQRERH YNMLQFQVSS SSLARIFRLL
     VSHKDSLLIE EYSVTQTTLD QVFVNFAKQQ NETYDLPLHP RAAGASRQAK EVDKGNSAPQ
     G
 
 
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