RS273_ARATH
ID RS273_ARATH Reviewed; 84 AA.
AC Q8L953; Q9FGV6;
DT 30-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 30-AUG-2005, sequence version 2.
DT 25-MAY-2022, entry version 126.
DE RecName: Full=40S ribosomal protein S27-3;
GN Name=RPS27D; Synonyms=ARS27B; OrderedLocusNames=At5g47930;
GN ORFNames=K16F13.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP IDENTIFICATION, AND INDUCTION.
RX PubMed=9889204; DOI=10.1093/emboj/18.2.490;
RA Revenkova E., Masson J., Koncz C., Afsar K., Jakovleva L., Paszkowski J.;
RT "Involvement of Arabidopsis thaliana ribosomal protein S27 in mRNA
RT degradation triggered by genotoxic stress.";
RL EMBO J. 18:490-499(1999).
RN [6]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000305};
CC Note=Binds 1 zinc ion per subunit. {ECO:0000305};
CC -!- INDUCTION: Down-regulated by UV-C treatment.
CC {ECO:0000269|PubMed:9889204}.
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eS27 family.
CC {ECO:0000305}.
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DR EMBL; AB024025; BAB09045.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95596.1; -; Genomic_DNA.
DR EMBL; AY046032; AAK76706.1; -; mRNA.
DR EMBL; AY079419; AAL85150.1; -; mRNA.
DR EMBL; AY088632; AAM66954.1; -; mRNA.
DR RefSeq; NP_199604.1; NM_124167.4.
DR AlphaFoldDB; Q8L953; -.
DR SMR; Q8L953; -.
DR BioGRID; 20092; 9.
DR STRING; 3702.AT5G47930.1; -.
DR iPTMnet; Q8L953; -.
DR PaxDb; Q8L953; -.
DR PRIDE; Q8L953; -.
DR ProteomicsDB; 237020; -.
DR EnsemblPlants; AT5G47930.1; AT5G47930.1; AT5G47930.
DR GeneID; 834844; -.
DR Gramene; AT5G47930.1; AT5G47930.1; AT5G47930.
DR KEGG; ath:AT5G47930; -.
DR Araport; AT5G47930; -.
DR TAIR; locus:2152773; AT5G47930.
DR eggNOG; KOG1779; Eukaryota.
DR HOGENOM; CLU_130128_3_0_1; -.
DR InParanoid; Q8L953; -.
DR OMA; LHPAIDF; -.
DR OrthoDB; 1537724at2759; -.
DR PhylomeDB; Q8L953; -.
DR PRO; PR:Q8L953; -.
DR Proteomes; UP000006548; Chromosome 5.
DR Genevisible; Q8L953; AT.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0022627; C:cytosolic small ribosomal subunit; HDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0000028; P:ribosomal small subunit assembly; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 2.20.25.100; -; 1.
DR HAMAP; MF_00371; Ribosomal_S27e; 1.
DR InterPro; IPR000592; Ribosomal_S27.
DR InterPro; IPR023407; Ribosomal_S27_Zn-bd_dom_sf.
DR InterPro; IPR011332; Ribosomal_zn-bd.
DR PANTHER; PTHR11594; PTHR11594; 1.
DR Pfam; PF01667; Ribosomal_S27e; 1.
DR SUPFAM; SSF57829; SSF57829; 1.
DR PROSITE; PS01168; RIBOSOMAL_S27E; 1.
PE 2: Evidence at transcript level;
KW Metal-binding; Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW Zinc; Zinc-finger.
FT CHAIN 1..84
FT /note="40S ribosomal protein S27-3"
FT /id="PRO_0000149061"
FT ZN_FING 39..61
FT /note="C4-type"
FT /evidence="ECO:0000255"
FT CONFLICT 14
FT /note="P -> A (in Ref. 4; AAM66954)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 84 AA; 9490 MW; 36EFFBE060E06110 CRC64;
MVLQNDIDLL HPPPELEKRK HKLKRLVQSP NSFFMDVKCQ GCFNITTVFS HSQTVVVCGN
CQTVLCQPTG GKARLQEGCS FRKK
