RS29_ARATH
ID RS29_ARATH Reviewed; 56 AA.
AC Q680P8; Q9LDT9;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 2.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=40S ribosomal protein S29;
GN Name=RPS29A; OrderedLocusNames=At3g43980; ORFNames=T15B3.120;
GN and
GN Name=RPS29B; OrderedLocusNames=At3g44010; ORFNames=T15B3.150;
GN and
GN Name=RPS29C; OrderedLocusNames=At4g33865; ORFNames=F17I5.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (RPS29A AND RPS29B).
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (RPS29C).
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (RPS29C).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (RPS29A; RPS29B AND RPS29C).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (RPS29C).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (RPS29C).
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (RPS29A; RPS29B AND RPS29C).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [9]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000305};
CC Note=Binds 1 zinc ion per subunit. {ECO:0000305};
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS14 family.
CC {ECO:0000305}.
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DR EMBL; AL163975; CAB88126.1; -; Genomic_DNA.
DR EMBL; AL163975; CAB88129.1; -; Genomic_DNA.
DR EMBL; AL031032; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002686; AEE77851.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77854.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65988.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE86285.1; -; Genomic_DNA.
DR EMBL; AK118617; BAC43215.1; -; mRNA.
DR EMBL; AF324695; AAG40046.1; -; mRNA.
DR EMBL; AF326888; AAG41470.1; -; mRNA.
DR EMBL; AF349528; AAK15575.1; -; mRNA.
DR EMBL; AF361851; AAK32863.1; -; mRNA.
DR EMBL; AY129480; AAM91066.1; -; mRNA.
DR EMBL; BT002766; AAO22594.1; -; mRNA.
DR EMBL; BT004344; AAO42338.1; -; mRNA.
DR EMBL; AF325031; AAG40383.1; -; mRNA.
DR EMBL; AK175132; BAD42895.1; -; mRNA.
DR EMBL; AK175152; BAD42915.1; -; mRNA.
DR EMBL; AK175172; BAD42935.1; -; mRNA.
DR EMBL; AK175173; BAD42936.1; -; mRNA.
DR EMBL; AK175283; BAD43046.1; -; mRNA.
DR EMBL; AK175731; BAD43494.1; -; mRNA.
DR EMBL; AK175739; BAD43502.1; -; mRNA.
DR EMBL; AK175819; BAD43582.1; -; mRNA.
DR EMBL; AK175918; BAD43681.1; -; mRNA.
DR EMBL; AK176060; BAD43823.1; -; mRNA.
DR EMBL; AK176070; BAD43833.1; -; mRNA.
DR EMBL; AK176294; BAD44057.1; -; mRNA.
DR EMBL; AK176295; BAD44058.1; -; mRNA.
DR EMBL; AK176322; BAD44085.1; -; mRNA.
DR EMBL; AK176332; BAD44095.1; -; mRNA.
DR EMBL; AK176439; BAD44202.1; -; mRNA.
DR EMBL; AK176861; BAD44624.1; -; mRNA.
DR EMBL; AK228020; BAE99982.1; -; mRNA.
DR EMBL; BT028875; ABI49422.1; -; mRNA.
DR EMBL; AY088245; AAM65785.1; -; mRNA.
DR EMBL; AY086767; AAM63818.1; -; mRNA.
DR EMBL; AY086371; AAM64438.1; -; mRNA.
DR PIR; T48952; T48952.
DR RefSeq; NP_001319679.1; NM_001339120.1.
DR RefSeq; NP_189984.1; NM_114266.2.
DR RefSeq; NP_189987.1; NM_114269.3.
DR RefSeq; NP_567938.1; NM_119544.4.
DR AlphaFoldDB; Q680P8; -.
DR SMR; Q680P8; -.
DR BioGRID; 8835; 1.
DR BioGRID; 8838; 1.
DR IntAct; Q680P8; 1.
DR STRING; 3702.AT3G43980.1; -.
DR iPTMnet; Q680P8; -.
DR PaxDb; Q680P8; -.
DR PRIDE; Q680P8; -.
DR ProteomicsDB; 237024; -.
DR EnsemblPlants; AT3G43980.1; AT3G43980.1; AT3G43980.
DR EnsemblPlants; AT3G44010.1; AT3G44010.1; AT3G44010.
DR EnsemblPlants; AT3G44010.2; AT3G44010.2; AT3G44010.
DR EnsemblPlants; AT4G33865.1; AT4G33865.1; AT4G33865.
DR GeneID; 823515; -.
DR GeneID; 823518; -.
DR GeneID; 829529; -.
DR Gramene; AT3G43980.1; AT3G43980.1; AT3G43980.
DR Gramene; AT3G44010.1; AT3G44010.1; AT3G44010.
DR Gramene; AT3G44010.2; AT3G44010.2; AT3G44010.
DR Gramene; AT4G33865.1; AT4G33865.1; AT4G33865.
DR KEGG; ath:AT3G43980; -.
DR KEGG; ath:AT3G44010; -.
DR KEGG; ath:AT4G33865; -.
DR Araport; AT3G43980; -.
DR Araport; AT3G44010; -.
DR Araport; AT4G33865; -.
DR TAIR; locus:2097119; AT3G43980.
DR TAIR; locus:2097154; AT3G44010.
DR TAIR; locus:505006550; AT4G33865.
DR eggNOG; KOG3506; Eukaryota.
DR HOGENOM; CLU_177289_1_1_1; -.
DR InParanoid; Q680P8; -.
DR OMA; HCFREIA; -.
DR OrthoDB; 1635465at2759; -.
DR PhylomeDB; Q680P8; -.
DR PRO; PR:Q680P8; -.
DR Proteomes; UP000006548; Chromosome 3.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q680P8; baseline and differential.
DR Genevisible; Q680P8; AT.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0022627; C:cytosolic small ribosomal subunit; HDA:TAIR.
DR GO; GO:0005886; C:plasma membrane; HDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0008270; F:zinc ion binding; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 4.10.830.10; -; 1.
DR InterPro; IPR039744; 40S_S29/30S_S14z.
DR InterPro; IPR001209; Ribosomal_S14.
DR InterPro; IPR043140; Ribosomal_S14/S29.
DR PANTHER; PTHR12010; PTHR12010; 1.
DR Pfam; PF00253; Ribosomal_S14; 1.
PE 3: Inferred from homology;
KW Metal-binding; Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW Zinc.
FT CHAIN 1..56
FT /note="40S ribosomal protein S29"
FT /id="PRO_0000250539"
FT BINDING 21
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255"
FT BINDING 24
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255"
FT BINDING 39
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255"
FT BINDING 42
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255"
FT CONFLICT 46
FT /note="N -> K (in Ref. 6; BAD43494/BAD43582/BAD43833)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 56 AA; 6429 MW; 5789A29F184A8F89 CRC64;
MGHSNVWNSH PKKYGPGSRL CRVCGNSHGL IRKYGLNCCR QCFRSNAKEI GFIKYR
