RS2_ORYSJ
ID RS2_ORYSJ Reviewed; 342 AA.
AC Q94IB1; Q948M5;
DT 21-AUG-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 138.
DE RecName: Full=Protein rough sheath 2 homolog;
DE AltName: Full=OsPHAN;
DE AltName: Full=OsRS2;
DE AltName: Full=Protein PHANTASTICA homolog;
GN Name=RS2; OrderedLocusNames=Os12g0572000, LOC_Os12g38400;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
RA Sato Y., Nishimura A., Ashikari M., Matsuoka M.;
RT "Isolation and characterization of a cDNA encoding an orthologue of Rough
RT Sheath 2 (OsRS2) from Oriza sativa.";
RL Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Transcription factor required for normal cell
CC differentiation. May interact with other proteins to repress the knox
CC homeobox genes (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB68270.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AB064519; BAB61618.1; -; mRNA.
DR EMBL; AB071600; BAB68270.1; ALT_INIT; Genomic_DNA.
DR EMBL; DP000011; ABA99670.1; -; Genomic_DNA.
DR EMBL; AP008218; BAF30108.1; -; Genomic_DNA.
DR EMBL; AP014968; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015620377.1; XM_015764891.1.
DR RefSeq; XP_015620378.1; XM_015764892.1.
DR AlphaFoldDB; Q94IB1; -.
DR SMR; Q94IB1; -.
DR STRING; 4530.OS12T0572000-00; -.
DR PaxDb; Q94IB1; -.
DR PRIDE; Q94IB1; -.
DR EnsemblPlants; Os12t0572000-01; Os12t0572000-01; Os12g0572000.
DR GeneID; 4352588; -.
DR Gramene; Os12t0572000-01; Os12t0572000-01; Os12g0572000.
DR KEGG; osa:4352588; -.
DR eggNOG; KOG0048; Eukaryota.
DR InParanoid; Q94IB1; -.
DR OrthoDB; 959551at2759; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR ExpressionAtlas; Q94IB1; baseline and differential.
DR GO; GO:0000793; C:condensed chromosome; IEA:EnsemblPlants.
DR GO; GO:0005730; C:nucleolus; IEA:EnsemblPlants.
DR GO; GO:0042803; F:protein homodimerization activity; IEA:EnsemblPlants.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IEA:EnsemblPlants.
DR GO; GO:0008356; P:asymmetric cell division; IEA:EnsemblPlants.
DR GO; GO:0042742; P:defense response to bacterium; IEA:EnsemblPlants.
DR GO; GO:0050832; P:defense response to fungus; IEA:EnsemblPlants.
DR GO; GO:0010338; P:leaf formation; IEA:EnsemblPlants.
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants.
DR GO; GO:0009944; P:polarity specification of adaxial/abaxial axis; IEA:EnsemblPlants.
DR GO; GO:0009946; P:proximal/distal axis specification; IEA:EnsemblPlants.
DR GO; GO:0045088; P:regulation of innate immune response; IEA:EnsemblPlants.
DR GO; GO:0009615; P:response to virus; IEA:EnsemblPlants.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR CDD; cd00167; SANT; 2.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR031055; RS2/Asn1.
DR InterPro; IPR001005; SANT/Myb.
DR PANTHER; PTHR47214:SF3; PTHR47214:SF3; 1.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51294; HTH_MYB; 2.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Repeat;
KW Transcription; Transcription regulation.
FT CHAIN 1..342
FT /note="Protein rough sheath 2 homolog"
FT /id="PRO_0000299136"
FT DOMAIN 1..58
FT /note="HTH myb-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DOMAIN 59..113
FT /note="HTH myb-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 32..58
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 86..109
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT COILED 253..304
FT /evidence="ECO:0000255"
SQ SEQUENCE 342 AA; 39042 MW; 5FB4A349E095A9E2 CRC64;
MQPPPMRERQ RWRPEEDAIL LAYVRQYGPR EWSLVSQRMN RPLHRDAKSC LERWKNYLRP
GIKKGSLTDD EQRLVIRLQA KHGNKWKKIA AEVPGRTAKR LGKWWEVFKE KQQRELRDRD
RRRLPPPLDG DERGCAGGRY DWLLEDFADK LVNDHHRRMM AAPILPPWMS SSPSSSSSPS
VTLSLASAAV APAPAAPPPT WGGGGGGEVV VAELMECCRE MEEGQRAWAA HRKEAAWRMK
RVEMQLETER ACRRREATEE FEAKMRALRE EQAAAVERVE AEYREKMAGL RRDAEAKEQK
MAEQWAAKHA RLAKFLDQVA ACRRWPPVEI NGGGGGGPGG GR
