RS4E_PYRAB
ID RS4E_PYRAB Reviewed; 243 AA.
AC Q9V1U8; G8ZHW3;
DT 16-NOV-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 117.
DE RecName: Full=30S ribosomal protein S4e;
GN Name=rps4e; OrderedLocusNames=PYRAB03290; ORFNames=PAB2397;
OS Pyrococcus abyssi (strain GE5 / Orsay).
OC Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae;
OC Pyrococcus.
OX NCBI_TaxID=272844;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=GE5 / Orsay;
RX PubMed=12622808; DOI=10.1046/j.1365-2958.2003.03381.x;
RA Cohen G.N., Barbe V., Flament D., Galperin M., Heilig R., Lecompte O.,
RA Poch O., Prieur D., Querellou J., Ripp R., Thierry J.-C., Van der Oost J.,
RA Weissenbach J., Zivanovic Y., Forterre P.;
RT "An integrated analysis of the genome of the hyperthermophilic archaeon
RT Pyrococcus abyssi.";
RL Mol. Microbiol. 47:1495-1512(2003).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=GE5 / Orsay;
RX PubMed=22057919; DOI=10.1007/s00284-011-0035-x;
RA Gao J., Wang J.;
RT "Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and
RT Pyrococcus furiosus DSM 3638.";
RL Curr. Microbiol. 64:118-129(2012).
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eS4 family.
CC {ECO:0000305}.
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DR EMBL; AJ248284; CAB49251.1; -; Genomic_DNA.
DR EMBL; HE613800; CCE69706.1; -; Genomic_DNA.
DR PIR; D75146; D75146.
DR RefSeq; WP_010867451.1; NC_000868.1.
DR PDB; 6SW9; EM; 4.20 A; E=1-243.
DR PDB; 6SWC; EM; 3.30 A; E=1-243.
DR PDB; 6SWD; EM; 3.20 A; E=1-243.
DR PDBsum; 6SW9; -.
DR PDBsum; 6SWC; -.
DR PDBsum; 6SWD; -.
DR AlphaFoldDB; Q9V1U8; -.
DR SMR; Q9V1U8; -.
DR STRING; 272844.PAB2397; -.
DR EnsemblBacteria; CAB49251; CAB49251; PAB2397.
DR GeneID; 1495219; -.
DR KEGG; pab:PAB2397; -.
DR PATRIC; fig|272844.11.peg.350; -.
DR eggNOG; arCOG04093; Archaea.
DR HOGENOM; CLU_060400_0_0_2; -.
DR OMA; FPVGLMD; -.
DR OrthoDB; 89943at2157; -.
DR PhylomeDB; Q9V1U8; -.
DR Proteomes; UP000000810; Chromosome.
DR Proteomes; UP000009139; Chromosome.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR CDD; cd06087; KOW_RPS4; 1.
DR CDD; cd00165; S4; 1.
DR Gene3D; 2.30.30.30; -; 1.
DR Gene3D; 2.40.50.740; -; 1.
DR Gene3D; 3.10.290.10; -; 1.
DR HAMAP; MF_00485; Ribosomal_S4e; 1.
DR InterPro; IPR005824; KOW.
DR InterPro; IPR041982; KOW_RPS4.
DR InterPro; IPR014722; Rib_L2_dom2.
DR InterPro; IPR000876; Ribosomal_S4e.
DR InterPro; IPR013845; Ribosomal_S4e_central_region.
DR InterPro; IPR038237; Ribosomal_S4e_central_sf.
DR InterPro; IPR013843; Ribosomal_S4e_N.
DR InterPro; IPR018199; Ribosomal_S4e_N_CS.
DR InterPro; IPR002942; S4_RNA-bd.
DR InterPro; IPR036986; S4_RNA-bd_sf.
DR PANTHER; PTHR11581; PTHR11581; 1.
DR Pfam; PF00900; Ribosomal_S4e; 1.
DR Pfam; PF08071; RS4NT; 1.
DR Pfam; PF01479; S4; 1.
DR PIRSF; PIRSF002116; Ribosomal_S4; 1.
DR SMART; SM00739; KOW; 1.
DR SMART; SM00363; S4; 1.
DR PROSITE; PS00528; RIBOSOMAL_S4E; 1.
DR PROSITE; PS50889; S4; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Ribonucleoprotein; Ribosomal protein; RNA-binding;
KW rRNA-binding.
FT CHAIN 1..243
FT /note="30S ribosomal protein S4e"
FT /id="PRO_0000130857"
FT DOMAIN 43..105
FT /note="S4 RNA-binding"
FT STRAND 17..19
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 39..43
FT /evidence="ECO:0007829|PDB:6SWD"
FT HELIX 46..49
FT /evidence="ECO:0007829|PDB:6SWD"
FT TURN 50..52
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 57..59
FT /evidence="ECO:0007829|PDB:6SWD"
FT TURN 60..62
FT /evidence="ECO:0007829|PDB:6SWD"
FT HELIX 63..66
FT /evidence="ECO:0007829|PDB:6SWD"
FT TURN 67..69
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 91..93
FT /evidence="ECO:0007829|PDB:6SWD"
FT TURN 94..97
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 101..104
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 106..108
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 110..113
FT /evidence="ECO:0007829|PDB:6SWD"
FT TURN 118..121
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 122..133
FT /evidence="ECO:0007829|PDB:6SWD"
FT TURN 134..136
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 137..142
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 147..150
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 155..157
FT /evidence="ECO:0007829|PDB:6SWC"
FT STRAND 163..167
FT /evidence="ECO:0007829|PDB:6SWD"
FT TURN 168..170
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 173..177
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 184..187
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 189..192
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 196..203
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 212..216
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 222..226
FT /evidence="ECO:0007829|PDB:6SWD"
FT TURN 227..229
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 230..232
FT /evidence="ECO:0007829|PDB:6SWD"
FT STRAND 235..237
FT /evidence="ECO:0007829|PDB:6SWD"
SQ SEQUENCE 243 AA; 28194 MW; 4F8DC042FD7B583E CRC64;
MARKGPKRHL KRLAAPTSWY IERKAYKWAV RPRPGPHNMR TSIPLLYIVR DYLGYAKTAR
EARKILNEGK FLVDGRVRKD YKFPVGIMDV VSIPETGEHY RVLPNRIGKL ILHPISEEEA
NIKPLRIRNK RMVKGAKIQL NFHDGTNHLI PLSEKDNYFT SYTVLMKVPE REILEVLPFE
KGAYVFVTQG KNVARKGRIV EIKKFPMGWP DVVTIEDEEG ELFDTLKEYA FVVGRDKPRI
SLP
