ID   RS4_ORYSJ               Reviewed;         265 AA.
AC   P49398; O24235; Q6ETD5;
DT   01-FEB-1996, integrated into UniProtKB/Swiss-Prot.
DT   27-JUN-2006, sequence version 3.
DT   25-MAY-2022, entry version 130.
DE   RecName: Full=40S ribosomal protein S4;
DE   AltName: Full=SCAR protein SS620;
GN   Name=RPS4; Synonyms=SS620; OrderedLocusNames=Os02g0105900, LOC_Os02g01560;
GN   ORFNames=OJ1359_D06.12;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Zhonghua 8; TISSUE=Flower;
RA   Qu L.J., Zhang Y., Li D., Liu M., Gu H., Chen Z.;
RT   "Cloning and expression of a cDNA encoding ribosomal protein S4 from rice
RT   (Oryza sativa var japonica).";
RL   Submitted (OCT-1997) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 53-142.
RA   Uchimiya H.;
RL   Submitted (DEC-1993) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eS4 family.
CC       {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=CAA75242.1; Type=Frameshift; Evidence={ECO:0000305};
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DR   EMBL; Y15009; CAA75242.1; ALT_FRAME; mRNA.
DR   EMBL; AP004851; BAD28085.1; -; Genomic_DNA.
DR   EMBL; AP014958; BAS76564.1; -; Genomic_DNA.
DR   EMBL; D25237; BAA04961.1; -; mRNA.
DR   PIR; T04113; T04113.
DR   PIR; T04308; T04308.
DR   RefSeq; XP_015625833.1; XM_015770347.1.
DR   AlphaFoldDB; P49398; -.
DR   SMR; P49398; -.
DR   STRING; 4530.OS02T0105900-01; -.
DR   PaxDb; P49398; -.
DR   PRIDE; P49398; -.
DR   EnsemblPlants; Os02t0105900-01; Os02t0105900-01; Os02g0105900.
DR   GeneID; 4328016; -.
DR   Gramene; Os02t0105900-01; Os02t0105900-01; Os02g0105900.
DR   KEGG; osa:4328016; -.
DR   eggNOG; KOG0378; Eukaryota.
DR   HOGENOM; CLU_060400_1_0_1; -.
DR   InParanoid; P49398; -.
DR   OMA; FPVGLMD; -.
DR   OrthoDB; 1065966at2759; -.
DR   Proteomes; UP000000763; Chromosome 2.
DR   Proteomes; UP000059680; Chromosome 2.
DR   ExpressionAtlas; P49398; differential.
DR   Genevisible; P49398; OS.
DR   GO; GO:0022627; C:cytosolic small ribosomal subunit; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR   GO; GO:0006412; P:translation; IBA:GO_Central.
DR   CDD; cd06087; KOW_RPS4; 1.
DR   CDD; cd00165; S4; 1.
DR   Gene3D; 2.30.30.30; -; 1.
DR   Gene3D; 2.40.50.740; -; 1.
DR   Gene3D; 3.10.290.10; -; 1.
DR   HAMAP; MF_00485; Ribosomal_S4e; 1.
DR   InterPro; IPR032277; 40S_S4_C.
DR   InterPro; IPR005824; KOW.
DR   InterPro; IPR041982; KOW_RPS4.
DR   InterPro; IPR014722; Rib_L2_dom2.
DR   InterPro; IPR000876; Ribosomal_S4e.
DR   InterPro; IPR013845; Ribosomal_S4e_central_region.
DR   InterPro; IPR038237; Ribosomal_S4e_central_sf.
DR   InterPro; IPR013843; Ribosomal_S4e_N.
DR   InterPro; IPR018199; Ribosomal_S4e_N_CS.
DR   InterPro; IPR002942; S4_RNA-bd.
DR   InterPro; IPR036986; S4_RNA-bd_sf.
DR   PANTHER; PTHR11581; PTHR11581; 2.
DR   Pfam; PF16121; 40S_S4_C; 1.
DR   Pfam; PF00467; KOW; 1.
DR   Pfam; PF00900; Ribosomal_S4e; 1.
DR   Pfam; PF08071; RS4NT; 1.
DR   Pfam; PF01479; S4; 1.
DR   PIRSF; PIRSF002116; Ribosomal_S4; 1.
DR   SMART; SM00739; KOW; 1.
DR   SMART; SM00363; S4; 1.
DR   PROSITE; PS00528; RIBOSOMAL_S4E; 1.
DR   PROSITE; PS50889; S4; 1.
PE   2: Evidence at transcript level;
KW   Cytoplasm; Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW   RNA-binding; rRNA-binding.
FT   CHAIN           1..265
FT                   /note="40S ribosomal protein S4"
FT                   /id="PRO_0000130835"
FT   DOMAIN          42..104
FT                   /note="S4 RNA-binding"
FT   CONFLICT        137
FT                   /note="P -> R (in Ref. 4; BAA04961)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        141..142
FT                   /note="TY -> NL (in Ref. 4; BAA04961)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   265 AA;  29865 MW;  9D2CA56AFC438075 CRC64;
     MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILIIRN RLKYALTYRE
     VISILMQRHV LVDGKVRTDK TYPAGFMDVI SIPKTGENYR LLYDTKGRFR LQSVKDEDAK
     FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPIIKANDTI KIDLETNKIV DFIKFDVGNV
     VMVTGGRNTG RVGVIKNREK HKGSFETIHV EDALGHQFAT RLGNVFTIGK GNKPWVSLPK
     GKGIKLSIIE EQRKRDAAAQ AAANA