BASS1_ORYSJ
ID BASS1_ORYSJ Reviewed; 406 AA.
AC Q7XVB3; A0A0P0W9L6; B7E506;
DT 05-SEP-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2004, sequence version 2.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=Probable sodium/metabolite cotransporter BASS1, chloroplastic;
DE AltName: Full=Bile acid-sodium symporter family protein 1;
DE Flags: Precursor;
GN Name=BASS1; OrderedLocusNames=Os04g0381100, LOC_Os04g31210;
GN ORFNames=OSJNBa0072D21.3;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: May function as sodium-coupled metabolite transporter across
CC the chloroplast envelope. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}. Plastid, chloroplast envelope {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q7XVB3-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q7XVB3-2; Sequence=VSP_044058, VSP_044059;
CC -!- SIMILARITY: Belongs to the bile acid:sodium symporter (BASS) (TC
CC 2.A.28) family. {ECO:0000305}.
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DR EMBL; AL662977; CAD40745.2; -; Genomic_DNA.
DR EMBL; AP008210; BAF14515.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS88891.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS88892.1; -; Genomic_DNA.
DR EMBL; AK060452; BAG87453.1; -; mRNA.
DR EMBL; AK121764; BAH00647.1; -; mRNA.
DR RefSeq; XP_015633692.1; XM_015778206.1. [Q7XVB3-1]
DR RefSeq; XP_015633693.1; XM_015778207.1. [Q7XVB3-1]
DR AlphaFoldDB; Q7XVB3; -.
DR SMR; Q7XVB3; -.
DR STRING; 4530.OS04T0381100-02; -.
DR PaxDb; Q7XVB3; -.
DR PRIDE; Q7XVB3; -.
DR EnsemblPlants; Os04t0381100-01; Os04t0381100-01; Os04g0381100. [Q7XVB3-2]
DR EnsemblPlants; Os04t0381100-02; Os04t0381100-02; Os04g0381100. [Q7XVB3-1]
DR GeneID; 4335634; -.
DR Gramene; Os04t0381100-01; Os04t0381100-01; Os04g0381100. [Q7XVB3-2]
DR Gramene; Os04t0381100-02; Os04t0381100-02; Os04g0381100. [Q7XVB3-1]
DR KEGG; osa:4335634; -.
DR eggNOG; KOG2718; Eukaryota.
DR HOGENOM; CLU_034788_1_2_1; -.
DR InParanoid; Q7XVB3; -.
DR OMA; VPWIFAF; -.
DR OrthoDB; 1148347at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q7XVB3; OS.
DR GO; GO:0009706; C:chloroplast inner membrane; IEA:EnsemblPlants.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0098717; P:pantothenate import across plasma membrane; IEA:EnsemblPlants.
DR Gene3D; 1.20.1530.20; -; 1.
DR InterPro; IPR002657; BilAc:Na_symport/Acr3.
DR InterPro; IPR004710; Bilac:Na_transpt.
DR InterPro; IPR038770; Na+/solute_symporter_sf.
DR PANTHER; PTHR10361; PTHR10361; 1.
DR Pfam; PF01758; SBF; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Chloroplast; Membrane; Plastid; Reference proteome;
KW Transit peptide; Transmembrane; Transmembrane helix; Transport.
FT TRANSIT 1..64
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 65..406
FT /note="Probable sodium/metabolite cotransporter BASS1,
FT chloroplastic"
FT /id="PRO_0000418608"
FT TRANSMEM 98..118
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 123..143
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 152..172
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 187..209
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 217..237
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 252..272
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 278..298
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 315..335
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 376..396
FT /note="Helical"
FT /evidence="ECO:0000255"
FT VAR_SEQ 262..270
FT /note="VLAPVLLGA -> LEINLMLYC (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_044058"
FT VAR_SEQ 271..406
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_044059"
SQ SEQUENCE 406 AA; 42699 MW; F35D1F432E9A291D CRC64;
MPLLRRPPAA PHRTPIHHDK RLHLFSTHNT RHRATVSSLP VTCLRIRYSS SNPVRHLCGI
PSSRCHAAAD PAPSKIPGGG SGALEAGVVG WRDLLLQVGE VLSLGFPVWV ASACAVALWR
PPAFLWVSPM AQIVGISFTM LGMGMTLTLD DLKTALLMPK ELASGFLLQY SVMPLSGFLI
SKLLNLPSYY AAGLILVSCC PGGTASNIVT YLARGNVALS VLMTAASTFA AAFLTPLLTS
KLAGQYVAVD PMGLFVSTSQ VVLAPVLLGA LLNQYCNGLV QLVSPLMPFI AVATVAVLCG
NAIAQNASAI LSSGLQVVMS VCWLHASGFF FGYVLSRTIG IDISSSRTIS IEVGMQNSVL
GVVLASKHFG NPLTAVPCAV SSVCHSVYGS LLAGIWRSLP PNDKGQ
