BBRA_ORYSJ
ID BBRA_ORYSJ Reviewed; 341 AA.
AC P0DH88; H2KX85; Q6Q0M8; Q7G769; Q93VZ9;
DT 19-OCT-2011, integrated into UniProtKB/Swiss-Prot.
DT 19-OCT-2011, sequence version 1.
DT 03-AUG-2022, entry version 42.
DE RecName: Full=Barley B recombinant-like protein A;
DE Short=BBR-like protein A;
DE AltName: Full=GAGA-binding transcriptional activator BBR-A;
GN OrderedLocusNames=Os10g0114500, LOC_Os10g02509;
GN ORFNames=OJ1014H12.2, OsJ_30525, OSJNBa0092N12.11;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=12795701; DOI=10.1046/j.1365-313x.2003.01767.x;
RA Santi L., Wang Y., Stile M.R., Berendzen K.W., Wanke D., Roig C., Pozzi C.,
RA Mueller K., Mueller J., Rohde W., Salamini F.;
RT "The GA octodinucleotide repeat binding factor BBR participates in the
RT transcriptional regulation of the homeobox gene Bkn3.";
RL Plant J. 34:813-826(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Transcriptional regulator that specifically binds to GA-rich
CC elements (GAGA-repeats) present in regulatory sequences of genes
CC involved in developmental processes. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the BBR/BPC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAK52543.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAM44863.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY569035; AAS75865.1; -; mRNA.
DR EMBL; AC078891; AAK52543.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC098694; AAM44863.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000086; ABB46625.1; -; Genomic_DNA.
DR EMBL; DP000086; ABB46626.1; -; Genomic_DNA.
DR EMBL; DP000086; ABG65888.1; -; Genomic_DNA.
DR EMBL; AP008216; BAF25962.1; -; Genomic_DNA.
DR EMBL; AP014966; BAT09654.1; -; Genomic_DNA.
DR EMBL; CM000147; EEE50474.1; -; Genomic_DNA.
DR EMBL; AK063643; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015612725.1; XM_015757239.1.
DR RefSeq; XP_015612727.1; XM_015757241.1.
DR RefSeq; XP_015612730.1; XM_015757244.1.
DR RefSeq; XP_015612731.1; XM_015757245.1.
DR AlphaFoldDB; P0DH88; -.
DR STRING; 4530.OS10T0114500-01; -.
DR PaxDb; P0DH88; -.
DR PRIDE; P0DH88; -.
DR EnsemblPlants; Os10t0114500-01; Os10t0114500-01; Os10g0114500.
DR EnsemblPlants; Os10t0115200-01; Os10t0115200-01; Os10g0115200.
DR GeneID; 4347983; -.
DR GeneID; 9268674; -.
DR Gramene; Os10t0114500-01; Os10t0114500-01; Os10g0114500.
DR Gramene; Os10t0115200-01; Os10t0115200-01; Os10g0115200.
DR KEGG; osa:4347983; -.
DR KEGG; osa:9268674; -.
DR eggNOG; ENOG502QSGE; Eukaryota.
DR HOGENOM; CLU_039119_2_0_1; -.
DR InParanoid; P0DH88; -.
DR OMA; WISSQRD; -.
DR OrthoDB; 1257222at2759; -.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR ExpressionAtlas; P0DH88; baseline.
DR Genevisible; P0DH88; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0009723; P:response to ethylene; IBA:GO_Central.
DR InterPro; IPR010409; GAGA-bd_tscrpt_act.
DR PANTHER; PTHR31421; PTHR31421; 1.
DR Pfam; PF06217; GAGA_bind; 1.
DR SMART; SM01226; GAGA_bind; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..341
FT /note="Barley B recombinant-like protein A"
FT /id="PRO_0000413443"
FT REGION 48..95
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 150..234
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 341 AA; 37750 MW; 14F4BC5BA915F3BB CRC64;
MDDDASMSIR WGGFFESPAR NLGLQLMSSV PAERDTKQLL SGSPFLHHQH QQHVPHHHHQ
PHHPRDCGAN GNANGGAMPP PPATEAPPSM PMNFARSDMW MHPQQQQQHH HPREHKALHN
LTVGHGSSHI AHHDPVGYGM IPGTHTLQMM QQQTEPQLQP PPPPQQPKEE CISSPLIEEN
VPVIDEPPPP KKRQQGRQPK VPRAKKPKKS AAPREDGAPP NAPAPRRRGP RKNIGMVING
IDLDLSRIPT PICSCTGAPQ QCYRWGAGGW QSACCTTTIS TYPLPMSTKR RGARIAGRKM
SHGAFKKVLE KLAGEGYNLN NPIDLKTFWA KHGTNKFVTI R
