BBRD_ORYSJ
ID BBRD_ORYSJ Reviewed; 331 AA.
AC Q5VSA8; A0A0P0WSI7;
DT 19-OCT-2011, integrated into UniProtKB/Swiss-Prot.
DT 07-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 89.
DE RecName: Full=Barley B recombinant-like protein D;
DE Short=BBR-like protein D;
DE AltName: Full=GAGA-binding transcriptional activator BBR-D;
GN OrderedLocusNames=Os06g0130600, LOC_Os06g04010; ORFNames=P0493C11.7;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
RX PubMed=12795701; DOI=10.1046/j.1365-313x.2003.01767.x;
RA Santi L., Wang Y., Stile M.R., Berendzen K.W., Wanke D., Roig C., Pozzi C.,
RA Mueller K., Mueller J., Rohde W., Salamini F.;
RT "The GA octodinucleotide repeat binding factor BBR participates in the
RT transcriptional regulation of the homeobox gene Bkn3.";
RL Plant J. 34:813-826(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP DOMAIN DIMERIZATION.
RX PubMed=21347358; DOI=10.1371/journal.pone.0016070;
RA Wanke D., Hohenstatt M.L., Dynowski M., Bloss U., Hecker A., Elgass K.,
RA Hummel S., Hahn A., Caesar K., Schleifenbaum F., Harter K., Berendzen K.W.;
RT "Alanine zipper-like coiled-coil domains are necessary for homotypic
RT dimerization of plant GAGA-factors in the nucleus and nucleolus.";
RL PLoS ONE 6:E16070-E16070(2011).
CC -!- FUNCTION: Transcriptional regulator that specifically binds to GA-rich
CC elements (GAGA-repeats) present in regulatory sequences of genes
CC involved in developmental processes. {ECO:0000250}.
CC -!- SUBUNIT: Homodimer. Heterodimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- DOMAIN: Alanine-zipper domain is involved in homo- or hetero-
CC dimerization via electrostatic interaction.
CC {ECO:0000269|PubMed:21347358}.
CC -!- SIMILARITY: Belongs to the BBR/BPC family. {ECO:0000305}.
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DR EMBL; AY957504; AAX59045.1; -; Genomic_DNA.
DR EMBL; AY957505; AAX59046.1; -; mRNA.
DR EMBL; AP000559; BAD67667.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18605.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS95976.1; -; Genomic_DNA.
DR EMBL; AK070616; BAG92056.1; -; mRNA.
DR RefSeq; XP_015641153.1; XM_015785667.1.
DR RefSeq; XP_015641154.1; XM_015785668.1.
DR AlphaFoldDB; Q5VSA8; -.
DR SMR; Q5VSA8; -.
DR STRING; 4530.OS06T0130600-01; -.
DR PaxDb; Q5VSA8; -.
DR PRIDE; Q5VSA8; -.
DR EnsemblPlants; Os06t0130600-01; Os06t0130600-01; Os06g0130600.
DR GeneID; 4340004; -.
DR Gramene; Os06t0130600-01; Os06t0130600-01; Os06g0130600.
DR KEGG; osa:4340004; -.
DR eggNOG; ENOG502QSGE; Eukaryota.
DR HOGENOM; CLU_039119_0_0_1; -.
DR InParanoid; Q5VSA8; -.
DR OMA; FGKSHEW; -.
DR OrthoDB; 1076395at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q5VSA8; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0009723; P:response to ethylene; IBA:GO_Central.
DR InterPro; IPR010409; GAGA-bd_tscrpt_act.
DR PANTHER; PTHR31421; PTHR31421; 1.
DR Pfam; PF06217; GAGA_bind; 1.
DR SMART; SM01226; GAGA_bind; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..331
FT /note="Barley B recombinant-like protein D"
FT /id="PRO_0000413446"
FT REGION 51..86
FT /note="Alanine-zipper"
FT REGION 104..140
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 156..205
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 43..101
FT /evidence="ECO:0000255"
SQ SEQUENCE 331 AA; 36612 MW; 551C3400AF93B915 CRC64;
MDNLGHRENG RQRPDQYKGL HTQWMMPQTQ RHLKDHQSMN LLALMNDRDN AIRERDHALA
EKKAAIAERD MAFTQRDAAM AERNAAVVER DNALAALELA RTNGLNMNNG NGFPQGSLSG
SKNIHHHDQL SHAQSSPLQL ADSPYDHARE MHISEAYPIS TAPGSAGKAK RPKKNSSQAS
PLKRPSGVLR KTKKPSGDWK NVGMSGCGDD SAHASVMKNE WKDQNLGLNQ VAFDDSTMPA
PACSCTGKLR QCYKWGNGGW QSSCCTMNIS MYPLPVMPNK RHARMGGRKM SGGAFTKLLS
RLAAEGHDLS TPVDLKDHWA KHGTNRYITI R
