RSBZ3_ORYSJ
ID RSBZ3_ORYSJ Reviewed; 298 AA.
AC Q6ETX0; Q40724;
DT 30-AUG-2017, integrated into UniProtKB/Swiss-Prot.
DT 16-AUG-2004, sequence version 1.
DT 03-AUG-2022, entry version 130.
DE RecName: Full=bZIP transcription factor RISBZ3 {ECO:0000305};
DE AltName: Full=Rice seed bZIP3 {ECO:0000305};
DE AltName: Full=bZIP transcription factor 20 {ECO:0000303|PubMed:18065552};
DE Short=OsbZIP20 {ECO:0000303|PubMed:18065552};
GN Name=RISBZ3 {ECO:0000303|PubMed:11133985};
GN Synonyms=BZIP20 {ECO:0000303|PubMed:18065552},
GN RITA-1 {ECO:0000303|PubMed:7919992};
GN OrderedLocusNames=Os02g0266800 {ECO:0000312|EMBL:BAF08421.1},
GN LOC_Os02g16680 {ECO:0000305};
GN ORFNames=OsJ_06179 {ECO:0000312|EMBL:EEE56704.1},
GN P0006C08.38 {ECO:0000312|EMBL:BAD27900.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
RX PubMed=7919992; DOI=10.2307/3869825;
RA Izawa T., Foster R., Nakajima M., Shimamoto K., Chua N.H.;
RT "The rice bZIP transcriptional activator RITA-1 is highly expressed during
RT seed development.";
RL Plant Cell 6:1277-1287(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, SUBUNIT, AND DEVELOPMENTAL STAGE.
RX PubMed=11133985; DOI=10.1074/jbc.m007405200;
RA Onodera Y., Suzuki A., Wu C.Y., Washida H., Takaiwa F.;
RT "A rice functional transcriptional activator, RISBZ1, responsible for
RT endosperm-specific expression of storage protein genes through GCN4
RT motif.";
RL J. Biol. Chem. 276:14139-14152(2001).
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18065552; DOI=10.1104/pp.107.112821;
RA Nijhawan A., Jain M., Tyagi A.K., Khurana J.P.;
RT "Genomic survey and gene expression analysis of the basic leucine zipper
RT transcription factor family in rice.";
RL Plant Physiol. 146:333-350(2008).
CC -!- FUNCTION: Transcriptional activator that possesses broad binding
CC specificity for DNA promoter elements with the core sequence 5'-ACGT-
CC 3'. May be involved in the regulation of genes expressed during seed
CC development (PubMed:7919992). Binds to the DNA specific sequence 5'-
CC TGAGTCA-3' found in seed storage protein gene promoters
CC (PubMed:11133985). {ECO:0000269|PubMed:11133985,
CC ECO:0000269|PubMed:7919992}.
CC -!- SUBUNIT: Heterodimer with RISBZ1/BZIP58. {ECO:0000269|PubMed:11133985}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00978}.
CC -!- TISSUE SPECIFICITY: Expressed in developing endosperm, especially in
CC aleurone layer cells. {ECO:0000269|PubMed:7919992}.
CC -!- DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days
CC after flowering (DAF). {ECO:0000269|PubMed:11133985}.
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DR EMBL; L34551; AAC37418.1; -; mRNA.
DR EMBL; AP004683; BAD27900.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08421.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS78022.1; -; Genomic_DNA.
DR EMBL; CM000139; EEE56704.1; -; Genomic_DNA.
DR EMBL; AK070674; BAG92089.1; -; mRNA.
DR PIR; T03990; T03990.
DR RefSeq; XP_015625526.1; XM_015770040.1.
DR AlphaFoldDB; Q6ETX0; -.
DR STRING; 4530.OS02T0266800-01; -.
DR PaxDb; Q6ETX0; -.
DR PRIDE; Q6ETX0; -.
DR EnsemblPlants; Os02t0266800-01; Os02t0266800-01; Os02g0266800.
DR GeneID; 4328963; -.
DR Gramene; Os02t0266800-01; Os02t0266800-01; Os02g0266800.
DR KEGG; osa:4328963; -.
DR eggNOG; ENOG502QV87; Eukaryota.
DR HOGENOM; CLU_057781_0_0_1; -.
DR InParanoid; Q6ETX0; -.
DR OMA; CPSEINF; -.
DR OrthoDB; 1446419at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd14702; bZIP_plant_GBF1; 1.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR045314; bZIP_plant_GBF1.
DR InterPro; IPR046347; bZIP_sf.
DR InterPro; IPR044168; RISBZ3/4/5.
DR PANTHER; PTHR47693; PTHR47693; 1.
DR Pfam; PF00170; bZIP_1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
DR PROSITE; PS00036; BZIP_BASIC; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..298
FT /note="bZIP transcription factor RISBZ3"
FT /id="PRO_0000441224"
FT DOMAIN 141..204
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 13..39
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 104..138
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 143..162
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 169..183
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 268..298
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 13..27
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 104..123
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 298 AA; 31745 MW; 2CE42FED54583428 CRC64;
MKKCPSELNF EAFFHGERGE DDADAAADQK PGGGPHPPPF AMFSAADLSS FGFADSVTST
ITGVIPNHIW PQSQSLNARH PAVYTIESQS SICAAASPTS ATTLNMKESQ TLGGTSGSDS
DSESLLDIEG GPCEQSTNPL DVKRMRRMVS NRESARRSRK RKQAHLADLE TQVDQLRGEN
ASLFKQLTDA NQQFTTAVTD NRILKSDVEA LRVKVKMAED MVARGALSCG LGHLGGLSPA
LNPRQGACRV PDVLTGLDYA GDDPFTGLSP PEQVQMPGGG EVGDAWGWDN HSNGAMSK
