RSBZ4_ORYSJ
ID RSBZ4_ORYSJ Reviewed; 278 AA.
AC Q6H500; A3A3N8; O82034; Q0E3H1; Q9AVD0;
DT 30-AUG-2017, integrated into UniProtKB/Swiss-Prot.
DT 30-AUG-2017, sequence version 2.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=bZIP transcription factor RISBZ4 {ECO:0000305};
DE AltName: Full=Rice seed bZIP4 {ECO:0000305};
DE AltName: Full=bZIP transcription factor 15 {ECO:0000303|PubMed:18065552};
DE Short=OsbZIP15 {ECO:0000303|PubMed:18065552};
GN Name=RISBZ4 {ECO:0000303|PubMed:11133985};
GN Synonyms=BZIP15 {ECO:0000303|PubMed:18065552}, RITA-2 {ECO:0000303|Ref.7};
GN OrderedLocusNames=Os02g0175100 {ECO:0000312|EMBL:BAS77241.1},
GN LOC_Os02g07840 {ECO:0000305};
GN ORFNames=OJ1077_E05.6 {ECO:0000312|EMBL:BAD27607.1},
GN OsJ_05580 {ECO:0000312|EMBL:EAZ21927.1},
GN OSJNBa0073A21.32 {ECO:0000312|EMBL:BAD26199.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, AND DEVELOPMENTAL STAGE.
RX PubMed=11133985; DOI=10.1074/jbc.m007405200;
RA Onodera Y., Suzuki A., Wu C.Y., Washida H., Takaiwa F.;
RT "A rice functional transcriptional activator, RISBZ1, responsible for
RT endosperm-specific expression of storage protein genes through GCN4
RT motif.";
RL J. Biol. Chem. 276:14139-14152(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 80-278 (ISOFORM 1).
RC TISSUE=Seed;
RA Bligh H.F., Harrington S.E., Jones C.A., McCouch S.R.;
RT "Mapping of a family of rice transcriptional activator(RITA) genes in rice
RT (Oryza sativa L.).";
RL Submitted (AUG-1997) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18065552; DOI=10.1104/pp.107.112821;
RA Nijhawan A., Jain M., Tyagi A.K., Khurana J.P.;
RT "Genomic survey and gene expression analysis of the basic leucine zipper
RT transcription factor family in rice.";
RL Plant Physiol. 146:333-350(2008).
CC -!- FUNCTION: Probable transcription factor that binds to the DNA specific
CC sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters.
CC {ECO:0000269|PubMed:11133985}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00978}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6H500-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6H500-2; Sequence=VSP_059042;
CC -!- DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days
CC after flowering (DAF). {ECO:0000269|PubMed:11133985}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF07967.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AB053473; BAB39174.1; -; mRNA.
DR EMBL; AP005772; BAD26199.1; -; Genomic_DNA.
DR EMBL; AP003992; BAD27607.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF07967.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP014958; BAS77241.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ21927.1; -; Genomic_DNA.
DR EMBL; AK069575; BAG91497.1; -; mRNA.
DR EMBL; AJ001265; CAA04639.1; -; mRNA.
DR PIR; T03991; T03991.
DR RefSeq; XP_015623252.1; XM_015767766.1. [Q6H500-1]
DR RefSeq; XP_015623253.1; XM_015767767.1. [Q6H500-2]
DR AlphaFoldDB; Q6H500; -.
DR SMR; Q6H500; -.
DR STRING; 4530.OS02T0175100-01; -.
DR PaxDb; Q6H500; -.
DR PRIDE; Q6H500; -.
DR EnsemblPlants; Os02t0175100-01; Os02t0175100-01; Os02g0175100. [Q6H500-2]
DR GeneID; 4328469; -.
DR Gramene; Os02t0175100-01; Os02t0175100-01; Os02g0175100. [Q6H500-2]
DR KEGG; osa:4328469; -.
DR eggNOG; ENOG502QV87; Eukaryota.
DR HOGENOM; CLU_057781_0_0_1; -.
DR InParanoid; Q6H500; -.
DR OMA; ASSTWAI; -.
DR OrthoDB; 1446419at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd14702; bZIP_plant_GBF1; 1.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR045314; bZIP_plant_GBF1.
DR InterPro; IPR046347; bZIP_sf.
DR InterPro; IPR044168; RISBZ3/4/5.
DR PANTHER; PTHR47693; PTHR47693; 1.
DR Pfam; PF00170; bZIP_1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
DR PROSITE; PS00036; BZIP_BASIC; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..278
FT /note="bZIP transcription factor RISBZ4"
FT /id="PRO_0000441225"
FT DOMAIN 122..185
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 85..119
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 124..143
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 150..164
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT COMPBIAS 85..104
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 75
FT /note="Missing (in isoform 2)"
FT /id="VSP_059042"
FT CONFLICT 262
FT /note="V -> L (in Ref. 7; CAA04639)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 278 AA; 29383 MW; 2C248C3CB748AE74 CRC64;
MDIEAFIHGG SGGGDADADH PLGIFSAADL SGFGFADSST ITGGIPNHIW PQSQNLNARH
PAVSTTIESQ SSICAAASPT SATNLNMKES QTLGGTSGSD SESESLLDIE GGPCEQSTNP
LDVKRVRRMV SNRESARRSR KRKQAHLADL ESQVDQLRGE NASLFKQLTD ANQQFTTSVT
DNRILKSDVE ALRVKVKMAE DMVARGALSC GLGHLGGLSP ALNPRQACRV PDVLAGLDYA
GDDPFTAGLS QPEQLQMPGG EVVDAWGWDN HPNGGMSK
