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BC11A_HUMAN
ID   BC11A_HUMAN             Reviewed;         835 AA.
AC   Q9H165; D6W5D7; Q66LN6; Q86W14; Q8WU92; Q96JL6; Q9H163; Q9H164; Q9H3G9;
AC   Q9NWA7;
DT   01-MAR-2004, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2004, sequence version 2.
DT   03-AUG-2022, entry version 189.
DE   RecName: Full=B-cell lymphoma/leukemia 11A {ECO:0000303|PubMed:11719382};
DE            Short=BCL-11A;
DE   AltName: Full=B-cell CLL/lymphoma 11A;
DE   AltName: Full=COUP-TF-interacting protein 1;
DE   AltName: Full=Ecotropic viral integration site 9 protein homolog;
DE            Short=EVI-9;
DE   AltName: Full=Zinc finger protein 856;
GN   Name=BCL11A; Synonyms=CTIP1, EVI9, KIAA1809, ZNF856;
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3), TISSUE SPECIFICITY, AND
RP   CHROMOSOMAL TRANSLOCATION.
RX   PubMed=11719382; DOI=10.1182/blood.v98.12.3413;
RA   Satterwhite E., Sonoki T., Willis T.G., Harder L., Nowak R., Arriola E.L.,
RA   Liu H., Price H.P., Gesk S., Steinemann D., Schlegelberger B., Oscier D.G.,
RA   Siebert R., Tucker P.W., Dyer M.J.;
RT   "The BCL11 gene family: involvement of BCL11A in lymphoid malignancies.";
RL   Blood 98:3413-3420(2001).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 6).
RA   Suriyapperuma S.P., Sarfarazi M.;
RT   "Identification of a new isoform for B-cell CLL/lymphoma 11A (BCL11A)
RT   gene.";
RL   Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 7).
RC   TISSUE=Tonsil;
RA   Ippolito G.C., Wall J.K., Allred L.K., Tucker P.W.;
RT   "Identification of a novel isoform of BCL11A: BCL11A-XS (extra-short).";
RL   Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC   TISSUE=Brain;
RX   PubMed=11347906; DOI=10.1093/dnares/8.2.85;
RA   Nagase T., Nakayama M., Nakajima D., Kikuno R., Ohara O.;
RT   "Prediction of the coding sequences of unidentified human genes. XX. The
RT   complete sequences of 100 new cDNA clones from brain which code for large
RT   proteins in vitro.";
RL   DNA Res. 8:85-95(2001).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA   Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M.,
RA   Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J.,
RA   Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S.,
RA   Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H.,
RA   Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K.,
RA   Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D.,
RA   Hunkapiller M.W., Myers E.W., Venter J.C.;
RL   Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC   TISSUE=Lymph;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [7]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 2-744 (ISOFORM 1), SUBCELLULAR LOCATION, AND
RP   TISSUE SPECIFICITY.
RC   TISSUE=Fetal brain;
RX   PubMed=11161790; DOI=10.1006/geno.2000.6385;
RA   Saiki Y., Yamazaki Y., Yoshida M., Katoh O., Nakamura T.;
RT   "Human EVI9, a homologue of the mouse myeloid leukemia gene, is expressed
RT   in the hematopoietic progenitors and down-regulated during myeloid
RT   differentiation of HL60 cells.";
RL   Genomics 70:387-391(2000).
RN   [8]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 636-835.
RC   TISSUE=Embryo;
RX   PubMed=14702039; DOI=10.1038/ng1285;
RA   Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
RA   Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
RA   Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
RA   Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
RA   Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H.,
RA   Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M.,
RA   Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K.,
RA   Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T.,
RA   Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M.,
RA   Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S.,
RA   Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H.,
RA   Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K.,
RA   Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N.,
RA   Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
RA   Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
RA   Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
RA   Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
RA   Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y.,
RA   Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K.,
RA   Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T.,
RA   Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T.,
RA   Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y.,
RA   Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H.,
RA   Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y.,
RA   Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H.,
RA   Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O.,
RA   Isogai T., Sugano S.;
RT   "Complete sequencing and characterization of 21,243 full-length human
RT   cDNAs.";
RL   Nat. Genet. 36:40-45(2004).
RN   [9]
RP   FUNCTION, AND ALTERNATIVE SPLICING (ISOFORMS 1; 2; 3 AND 7).
RX   PubMed=16704730; DOI=10.1186/1476-4598-5-18;
RA   Liu H., Ippolito G.C., Wall J.K., Niu T., Probst L., Lee B.S., Pulford K.,
RA   Banham A.H., Stockwin L., Shaffer A.L., Staudt L.M., Das C., Dyer M.J.,
RA   Tucker P.W.;
RT   "Functional studies of BCL11A: characterization of the conserved BCL11A-XL
RT   splice variant and its interaction with BCL6 in nuclear paraspeckles of
RT   germinal center B cells.";
RL   Mol. Cancer 5:18-34(2006).
RN   [10]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=19413330; DOI=10.1021/ac9004309;
RA   Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.;
RT   "Lys-N and trypsin cover complementary parts of the phosphoproteome in a
RT   refined SCX-based approach.";
RL   Anal. Chem. 81:4493-4501(2009).
RN   [11]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-205 AND SER-608, AND
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=19369195; DOI=10.1074/mcp.m800588-mcp200;
RA   Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G.,
RA   Mann M., Daub H.;
RT   "Large-scale proteomics analysis of the human kinome.";
RL   Mol. Cell. Proteomics 8:1751-1764(2009).
RN   [12]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-332; SER-625; SER-630 AND
RP   THR-701, AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Leukemic T-cell;
RX   PubMed=19690332; DOI=10.1126/scisignal.2000007;
RA   Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,
RA   Rodionov V., Han D.K.;
RT   "Quantitative phosphoproteomic analysis of T cell receptor signaling
RT   reveals system-wide modulation of protein-protein interactions.";
RL   Sci. Signal. 2:RA46-RA46(2009).
RN   [13]
RP   REVIEW ON FUNCTION.
RX   PubMed=26375765; DOI=10.1016/j.gde.2015.08.001;
RA   Bauer D.E., Orkin S.H.;
RT   "Hemoglobin switching's surprise: the versatile transcription factor BCL11A
RT   is a master repressor of fetal hemoglobin.";
RL   Curr. Opin. Genet. Dev. 33:62-70(2015).
RN   [14]
RP   SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-123 AND LYS-833, AND
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=25755297; DOI=10.1074/mcp.o114.044792;
RA   Xiao Z., Chang J.G., Hendriks I.A., Sigurdsson J.O., Olsen J.V.,
RA   Vertegaal A.C.;
RT   "System-wide analysis of SUMOylation dynamics in response to replication
RT   stress reveals novel small ubiquitin-like modified target proteins and
RT   acceptor lysines relevant for genome stability.";
RL   Mol. Cell. Proteomics 14:1419-1434(2015).
RN   [15]
RP   SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-123; LYS-164; LYS-620 AND
RP   LYS-833, SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-123 (ISOFORM 6), AND
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=28112733; DOI=10.1038/nsmb.3366;
RA   Hendriks I.A., Lyon D., Young C., Jensen L.J., Vertegaal A.C.,
RA   Nielsen M.L.;
RT   "Site-specific mapping of the human SUMO proteome reveals co-modification
RT   with phosphorylation.";
RL   Nat. Struct. Mol. Biol. 24:325-336(2017).
RN   [16]
RP   VARIANT [LARGE SCALE ANALYSIS] PHE-142.
RX   PubMed=16959974; DOI=10.1126/science.1133427;
RA   Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D.,
RA   Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P.,
RA   Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V.,
RA   Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H.,
RA   Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W.,
RA   Velculescu V.E.;
RT   "The consensus coding sequences of human breast and colorectal cancers.";
RL   Science 314:268-274(2006).
RN   [17]
RP   POLYMORPHISM, AND ASSOCIATION WITH FETAL HEMOGLOBIN QUANTITATIVE TRAIT
RP   LOCUS 5.
RX   PubMed=17767159; DOI=10.1038/ng2108;
RA   Menzel S., Garner C., Gut I., Matsuda F., Yamaguchi M., Heath S.,
RA   Foglio M., Zelenika D., Boland A., Rooks H., Best S., Spector T.D.,
RA   Farrall M., Lathrop M., Thein S.L.;
RT   "A QTL influencing F cell production maps to a gene encoding a zinc-finger
RT   protein on chromosome 2p15.";
RL   Nat. Genet. 39:1197-1199(2007).
RN   [18]
RP   FUNCTION.
RX   PubMed=23644491; DOI=10.1038/ng.2628;
RA   Kadoch C., Hargreaves D.C., Hodges C., Elias L., Ho L., Ranish J.,
RA   Crabtree G.R.;
RT   "Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes
RT   identifies extensive roles in human malignancy.";
RL   Nat. Genet. 45:592-601(2013).
RN   [19]
RP   INVOLVEMENT IN IDPFH, VARIANTS IDPFH PRO-47; PHE-48 AND GLN-66,
RP   CHARACTERIZATION OF VARIANTS IDPFH PRO-47; PHE-48 AND GLN-66, FUNCTION, AND
RP   SUBCELLULAR LOCATION.
RX   PubMed=27453576; DOI=10.1016/j.ajhg.2016.05.030;
RG   DDD Study;
RA   Dias C., Estruch S.B., Grmaham S.A., McRae J., Sawiak S.J., Hurst J.A.,
RA   Joss S.K., Holder S.E., Morton J.E., Turner C., Thevenon J., Mellul K.,
RA   Sanchez-Andrade G., Ibarra-Soria X., Deriziotis P., Santos R.F., Lee S.C.,
RA   Faivre L., Kleefstra T., Liu P., Hurles M.E., Fisher S.E., Logan D.W.;
RT   "BCL11A haploinsufficiency causes an intellectual disability syndrome and
RT   dysregulates transcription.";
RL   Am. J. Hum. Genet. 99:253-274(2016).
RN   [20]
RP   FUNCTION, SUBCELLULAR LOCATION, AND DOMAIN.
RX   PubMed=29606353; DOI=10.1016/j.cell.2018.03.016;
RA   Liu N., Hargreaves V.V., Zhu Q., Kurland J.V., Hong J., Kim W., Sher F.,
RA   Macias-Trevino C., Rogers J.M., Kurita R., Nakamura Y., Yuan G.C.,
RA   Bauer D.E., Xu J., Bulyk M.L., Orkin S.H.;
RT   "Direct Promoter Repression by BCL11A Controls the Fetal to Adult
RT   Hemoglobin Switch.";
RL   Cell 173:430-442(2018).
RN   [21]
RP   INTERACTION WITH TBR1, CHARACTERIZATION OF VARIANTS IDPFH PRO-47; PHE-48
RP   AND GLN-66, AND DOMAIN.
RX   PubMed=30250039; DOI=10.1038/s41598-018-32053-6;
RA   den Hoed J., Sollis E., Venselaar H., Estruch S.B., Deriziotis P.,
RA   Fisher S.E.;
RT   "Functional characterization of TBR1 variants in neurodevelopmental
RT   disorder.";
RL   Sci. Rep. 8:14279-14279(2018).
CC   -!- FUNCTION: Transcription factor (PubMed:16704730, PubMed:29606353).
CC       Associated with the BAF SWI/SNF chromatin remodeling complex
CC       (PubMed:23644491). Binds to the 5'-TGACCA-3' sequence motif in
CC       regulatory regions of target genes, including a distal promoter of the
CC       HBG1 hemoglobin subunit gamma-1 gene (PubMed:29606353). Involved in
CC       regulation of the developmental switch from gamma- to beta-globin,
CC       probably via direct repression of HBG1; hence indirectly repressing
CC       fetal hemoglobin (HbF) level (PubMed:29606353, PubMed:26375765).
CC       Involved in brain development (PubMed:27453576). May play a role in
CC       hematopoiesis (By similarity). Essential factor in lymphopoiesis
CC       required for B-cell formation in fetal liver (By similarity). May
CC       function as a modulator of the transcriptional repression activity of
CC       NR2F2 (By similarity). {ECO:0000250|UniProtKB:Q9QYE3,
CC       ECO:0000269|PubMed:16704730, ECO:0000269|PubMed:23644491,
CC       ECO:0000269|PubMed:29606353, ECO:0000303|PubMed:26375765,
CC       ECO:0000303|PubMed:27453576}.
CC   -!- SUBUNIT: Interacts with NR2F1, PIAS3, NR2F2 and NR2F6 (By similarity).
CC       Isoform 1, isoform 2 and isoform 3 form homodimers and heterodimers
CC       (PubMed:27453576). Isoform 2 interacts with TBR1 (PubMed:30250039).
CC       {ECO:0000250|UniProtKB:Q9QYE3, ECO:0000269|PubMed:27453576,
CC       ECO:0000269|PubMed:30250039}.
CC   -!- INTERACTION:
CC       Q9H165-2; Q8NEA9: GMCL2; NbExp=3; IntAct=EBI-10183342, EBI-745707;
CC       Q9H165-2; P25800: LMO1; NbExp=3; IntAct=EBI-10183342, EBI-8639312;
CC       Q9H165-2; Q15014: MORF4L2; NbExp=3; IntAct=EBI-10183342, EBI-399257;
CC       Q9H165-2; O43639: NCK2; NbExp=6; IntAct=EBI-10183342, EBI-713635;
CC       Q9H165-2; Q8NET5: NFAM1; NbExp=3; IntAct=EBI-10183342, EBI-11990542;
CC       Q9H165-2; Q13526: PIN1; NbExp=3; IntAct=EBI-10183342, EBI-714158;
CC       Q9H165-2; O43167: ZBTB24; NbExp=3; IntAct=EBI-10183342, EBI-744471;
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:11161790}. Nucleus
CC       {ECO:0000269|PubMed:11161790}. Chromosome
CC       {ECO:0000269|PubMed:29606353}. Note=Associates with the nuclear body.
CC       Colocalizes with SUMO1 and SENP2 in nuclear speckles (By similarity).
CC       {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: [Isoform 1]: Nucleus matrix
CC       {ECO:0000269|PubMed:16704730}. Note=Colocalizes with BCL6 in nuclear
CC       paraspeckles. {ECO:0000269|PubMed:16704730}.
CC   -!- SUBCELLULAR LOCATION: [Isoform 2]: Cytoplasm
CC       {ECO:0000269|PubMed:27453576}. Nucleus {ECO:0000269|PubMed:27453576}.
CC       Note=Predominantly localized in the nucleus in nuclear paraspeckles.
CC       {ECO:0000269|PubMed:27453576}.
CC   -!- SUBCELLULAR LOCATION: [Isoform 3]: Cytoplasm
CC       {ECO:0000269|PubMed:27453576}. Nucleus {ECO:0000269|PubMed:27453576}.
CC       Note=Predominantly localized in the cytoplasm in the absence of
CC       interaction with isoform 1 and isoform 2. In presence of isoform 1 or
CC       isoform 2, translocates from the cytoplasm into nuclear paraspeckles.
CC       {ECO:0000269|PubMed:27453576}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=5;
CC       Name=1; Synonyms=BCL11A-XL {ECO:0000303|PubMed:11719382}, BCL11A extra
CC       long form;
CC         IsoId=Q9H165-1; Sequence=Displayed;
CC       Name=2; Synonyms=BCL11A-L {ECO:0000303|PubMed:11719382}, BCL11A long
CC       form;
CC         IsoId=Q9H165-2; Sequence=VSP_009554, VSP_009555;
CC       Name=3 {ECO:0000303|PubMed:11719382}; Synonyms=BCL11A-S, BCL11A short
CC       form;
CC         IsoId=Q9H165-3; Sequence=VSP_009550, VSP_009552;
CC       Name=6;
CC         IsoId=Q9H165-6; Sequence=VSP_009548;
CC       Name=7; Synonyms=BCL11A-XS, BCL11A eXtra short form;
CC         IsoId=Q9H165-8; Sequence=VSP_058656, VSP_058657;
CC   -!- TISSUE SPECIFICITY: Expressed at high levels in brain, spleen thymus,
CC       bone marrow and testis. Expressed in CD34-positive myeloid precursor
CC       cells, B-cells, monocytes and megakaryocytes. Expression is tightly
CC       regulated during B-cell development. {ECO:0000269|PubMed:11161790,
CC       ECO:0000269|PubMed:11719382}.
CC   -!- TISSUE SPECIFICITY: [Isoform 1]: Expressed in fetal and adult brain,
CC       and in the plasmacytoid dendritic cell. {ECO:0000269|PubMed:16704730}.
CC   -!- DOMAIN: The N-terminus is involved in protein dimerization and in
CC       transactivation of transcription. {ECO:0000269|PubMed:27453576}.
CC   -!- DOMAIN: The C-terminus of isoform 2 is necessary for isoform 2
CC       interaction with TBR1. {ECO:0000269|PubMed:30250039}.
CC   -!- DOMAIN: Zinc finger domains are necessary for sequence-specific binding
CC       to DNA. {ECO:0000269|PubMed:29606353}.
CC   -!- PTM: Sumoylated with SUMO1. {ECO:0000250|UniProtKB:Q9QYE3}.
CC   -!- POLYMORPHISM: Genetic variation in BCL11A underlies the fetal
CC       hemoglobin quantitative trait locus 5 [MIM:142335]. It is associated
CC       with quantitative variation in the production of F cells, that is
CC       erythrocytes containing measurable amounts of fetal hemoglobin (HbF).
CC       In healthy adults, HbF is present at residual levels (less than 0.6% of
CC       total hemoglobin) with over twenty-fold variation. Ten to fifteen
CC       percent of adults in the upper tail of the distribution have HbF levels
CC       between 0.8% and 5.0%, a condition referred to as heterocellular
CC       hereditary persistence of fetal hemoglobin (hHPFH). Although these HbF
CC       levels are modest in otherwise healthy individuals, interaction of
CC       hHPFH with beta thalassemia or sickle cell disease can increase HbF
CC       output in these individuals to levels that are clinically beneficial.
CC       {ECO:0000269|PubMed:17767159}.
CC   -!- DISEASE: Note=Chromosomal aberrations involving BCL11A are associated
CC       with B-cell malignancies. Translocation t(2;14)(p13;q32.3) causes
CC       BCL11A deregulation and overexpression. {ECO:0000269|PubMed:11719382}.
CC   -!- DISEASE: Intellectual developmental disorder with persistence of fetal
CC       hemoglobin (IDPFH) [MIM:617101]: An autosomal dominant disorder
CC       characterized by delayed psychomotor development, intellectual
CC       disability, variable dysmorphic features, including microcephaly,
CC       downslanting palpebral fissures, strabismus, and external ear
CC       abnormalities, and asymptomatic persistence of fetal hemoglobin.
CC       {ECO:0000269|PubMed:27453576, ECO:0000269|PubMed:30250039}. Note=The
CC       disease is caused by variants affecting the gene represented in this
CC       entry.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAG49025.1; Type=Miscellaneous discrepancy; Evidence={ECO:0000305};
CC       Sequence=BAB47438.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and
CC       Haematology;
CC       URL="http://atlasgeneticsoncology.org/Genes/BCL11AID391.html";
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DR   EMBL; AJ404611; CAC17723.1; -; mRNA.
DR   EMBL; AJ404612; CAC17724.1; -; mRNA.
DR   EMBL; AJ404613; CAC17725.1; -; mRNA.
DR   EMBL; AY228763; AAO88272.1; -; mRNA.
DR   EMBL; AB058712; BAB47438.1; ALT_INIT; mRNA.
DR   EMBL; AY692278; AAU04557.1; -; mRNA.
DR   EMBL; AC007381; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AC009970; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CH471053; EAX00035.1; -; Genomic_DNA.
DR   EMBL; CH471053; EAX00040.1; -; Genomic_DNA.
DR   EMBL; CH471053; EAX00041.1; -; Genomic_DNA.
DR   EMBL; BC021098; AAH21098.1; -; mRNA.
DR   EMBL; AF080216; AAG49025.1; ALT_SEQ; mRNA.
DR   EMBL; AK001035; -; NOT_ANNOTATED_CDS; mRNA.
DR   CCDS; CCDS1861.1; -. [Q9H165-2]
DR   CCDS; CCDS1862.1; -. [Q9H165-1]
DR   CCDS; CCDS46295.1; -. [Q9H165-3]
DR   RefSeq; NP_060484.2; NM_018014.3. [Q9H165-2]
DR   RefSeq; NP_075044.2; NM_022893.3. [Q9H165-1]
DR   RefSeq; NP_612569.1; NM_138559.1. [Q9H165-3]
DR   RefSeq; XP_011531211.1; XM_011532909.1. [Q9H165-1]
DR   RefSeq; XP_016859823.1; XM_017004334.1.
DR   PDB; 5VTB; X-ray; 2.40 A; B=2-16.
DR   PDB; 6KI6; X-ray; 2.50 A; A/B=731-835.
DR   PDB; 6U9Q; X-ray; 1.83 A; A=730-835.
DR   PDBsum; 5VTB; -.
DR   PDBsum; 6KI6; -.
DR   PDBsum; 6U9Q; -.
DR   AlphaFoldDB; Q9H165; -.
DR   SMR; Q9H165; -.
DR   BioGRID; 119737; 95.
DR   DIP; DIP-45629N; -.
DR   IntAct; Q9H165; 30.
DR   MINT; Q9H165; -.
DR   STRING; 9606.ENSP00000338774; -.
DR   iPTMnet; Q9H165; -.
DR   PhosphoSitePlus; Q9H165; -.
DR   BioMuta; BCL11A; -.
DR   DMDM; 44887724; -.
DR   EPD; Q9H165; -.
DR   jPOST; Q9H165; -.
DR   MassIVE; Q9H165; -.
DR   MaxQB; Q9H165; -.
DR   PaxDb; Q9H165; -.
DR   PeptideAtlas; Q9H165; -.
DR   PRIDE; Q9H165; -.
DR   ProteomicsDB; 80362; -. [Q9H165-1]
DR   ProteomicsDB; 80363; -. [Q9H165-2]
DR   ProteomicsDB; 80364; -. [Q9H165-3]
DR   ProteomicsDB; 80367; -. [Q9H165-6]
DR   Antibodypedia; 30518; 473 antibodies from 37 providers.
DR   DNASU; 53335; -.
DR   Ensembl; ENST00000335712.11; ENSP00000338774.7; ENSG00000119866.22. [Q9H165-6]
DR   Ensembl; ENST00000356842.9; ENSP00000349300.4; ENSG00000119866.22. [Q9H165-2]
DR   Ensembl; ENST00000359629.10; ENSP00000352648.5; ENSG00000119866.22. [Q9H165-3]
DR   Ensembl; ENST00000409351.5; ENSP00000487844.1; ENSG00000119866.22. [Q9H165-8]
DR   Ensembl; ENST00000642384.2; ENSP00000496168.1; ENSG00000119866.22. [Q9H165-1]
DR   GeneID; 53335; -.
DR   KEGG; hsa:53335; -.
DR   MANE-Select; ENST00000642384.2; ENSP00000496168.1; NM_022893.4; NP_075044.2.
DR   UCSC; uc002sab.4; human. [Q9H165-1]
DR   CTD; 53335; -.
DR   DisGeNET; 53335; -.
DR   GeneCards; BCL11A; -.
DR   GeneReviews; BCL11A; -.
DR   HGNC; HGNC:13221; BCL11A.
DR   HPA; ENSG00000119866; Tissue enhanced (brain, lymphoid tissue, skin).
DR   MalaCards; BCL11A; -.
DR   MIM; 142335; phenotype.
DR   MIM; 606557; gene.
DR   MIM; 617101; phenotype.
DR   neXtProt; NX_Q9H165; -.
DR   OpenTargets; ENSG00000119866; -.
DR   Orphanet; 619233; Hereditary persistence of fetal hemoglobin-intellectual disability syndrome.
DR   Orphanet; 251380; Hereditary persistence of fetal hemoglobin-sickle cell disease syndrome.
DR   PharmGKB; PA25300; -.
DR   VEuPathDB; HostDB:ENSG00000119866; -.
DR   eggNOG; KOG1721; Eukaryota.
DR   GeneTree; ENSGT00940000156983; -.
DR   HOGENOM; CLU_007684_1_0_1; -.
DR   InParanoid; Q9H165; -.
DR   OMA; DMCDGDS; -.
DR   PhylomeDB; Q9H165; -.
DR   TreeFam; TF318131; -.
DR   PathwayCommons; Q9H165; -.
DR   Reactome; R-HSA-9700645; ALK mutants bind TKIs.
DR   Reactome; R-HSA-9725370; Signaling by ALK fusions and activated point mutants.
DR   SignaLink; Q9H165; -.
DR   SIGNOR; Q9H165; -.
DR   BioGRID-ORCS; 53335; 15 hits in 1091 CRISPR screens.
DR   ChiTaRS; BCL11A; human.
DR   GeneWiki; BCL11A; -.
DR   GenomeRNAi; 53335; -.
DR   Pharos; Q9H165; Tbio.
DR   PRO; PR:Q9H165; -.
DR   Proteomes; UP000005640; Chromosome 2.
DR   RNAct; Q9H165; protein.
DR   Bgee; ENSG00000119866; Expressed in cortical plate and 171 other tissues.
DR   ExpressionAtlas; Q9H165; baseline and differential.
DR   Genevisible; Q9H165; HS.
DR   GO; GO:0005737; C:cytoplasm; ISS:BHF-UCL.
DR   GO; GO:0005829; C:cytosol; TAS:Reactome.
DR   GO; GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.
DR   GO; GO:0005654; C:nucleoplasm; IDA:HPA.
DR   GO; GO:0005634; C:nucleus; IDA:BHF-UCL.
DR   GO; GO:0042382; C:paraspeckles; IDA:UniProtKB.
DR   GO; GO:0014069; C:postsynaptic density; IEA:Ensembl.
DR   GO; GO:0016514; C:SWI/SNF complex; IDA:UniProtKB.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR   GO; GO:0140297; F:DNA-binding transcription factor binding; IPI:UniProtKB.
DR   GO; GO:0001227; F:DNA-binding transcription repressor activity, RNA polymerase II-specific; IDA:NTNU_SB.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0046982; F:protein heterodimerization activity; IPI:BHF-UCL.
DR   GO; GO:0042803; F:protein homodimerization activity; IPI:UniProtKB.
DR   GO; GO:0019901; F:protein kinase binding; IEA:Ensembl.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IDA:NTNU_SB.
DR   GO; GO:0003712; F:transcription coregulator activity; IDA:ARUK-UCL.
DR   GO; GO:0001067; F:transcription regulatory region nucleic acid binding; IDA:ARUK-UCL.
DR   GO; GO:1905232; P:cellular response to L-glutamate; IEA:Ensembl.
DR   GO; GO:0030517; P:negative regulation of axon extension; ISS:BHF-UCL.
DR   GO; GO:2000173; P:negative regulation of branching morphogenesis of a nerve; IEA:Ensembl.
DR   GO; GO:0048671; P:negative regulation of collateral sprouting; IMP:BHF-UCL.
DR   GO; GO:2000171; P:negative regulation of dendrite development; IMP:BHF-UCL.
DR   GO; GO:1903860; P:negative regulation of dendrite extension; IEA:Ensembl.
DR   GO; GO:0010977; P:negative regulation of neuron projection development; IDA:BHF-UCL.
DR   GO; GO:1904800; P:negative regulation of neuron remodeling; IEA:Ensembl.
DR   GO; GO:0032463; P:negative regulation of protein homooligomerization; IC:BHF-UCL.
DR   GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IDA:NTNU_SB.
DR   GO; GO:0048672; P:positive regulation of collateral sprouting; IMP:BHF-UCL.
DR   GO; GO:0010628; P:positive regulation of gene expression; IEA:Ensembl.
DR   GO; GO:0010976; P:positive regulation of neuron projection development; IDA:BHF-UCL.
DR   GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; ISS:BHF-UCL.
DR   GO; GO:0016925; P:protein sumoylation; ISS:UniProtKB.
DR   GO; GO:0050773; P:regulation of dendrite development; IMP:BHF-UCL.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   InterPro; IPR036236; Znf_C2H2_sf.
DR   InterPro; IPR013087; Znf_C2H2_type.
DR   Pfam; PF00096; zf-C2H2; 5.
DR   SMART; SM00355; ZnF_C2H2; 6.
DR   SUPFAM; SSF57667; SSF57667; 3.
DR   PROSITE; PS00028; ZINC_FINGER_C2H2_1; 6.
DR   PROSITE; PS50157; ZINC_FINGER_C2H2_2; 6.
PE   1: Evidence at protein level;
KW   3D-structure; Alternative splicing; Chromosomal rearrangement; Chromosome;
KW   Cytoplasm; Disease variant; Intellectual disability; Isopeptide bond;
KW   Metal-binding; Methylation; Nucleus; Phosphoprotein; Reference proteome;
KW   Repeat; Repressor; Transcription; Transcription regulation;
KW   Ubl conjugation; Zinc; Zinc-finger.
FT   CHAIN           1..835
FT                   /note="B-cell lymphoma/leukemia 11A"
FT                   /id="PRO_0000047102"
FT   ZN_FING         170..193
FT                   /note="C2H2-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT   ZN_FING         377..399
FT                   /note="C2H2-type 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT   ZN_FING         405..429
FT                   /note="C2H2-type 3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT   ZN_FING         742..764
FT                   /note="C2H2-type 4"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT   ZN_FING         770..792
FT                   /note="C2H2-type 5"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT   ZN_FING         800..823
FT                   /note="C2H2-type 6"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT   REGION          1..210
FT                   /note="Required for nuclear body formation and for SUMO1
FT                   recruitment"
FT                   /evidence="ECO:0000250"
FT   REGION          1..41
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          323..376
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          421..458
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          471..512
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          572..619
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          678..740
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        11..39
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        351..374
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        436..458
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        479..508
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        572..600
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        679..699
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         86
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9QYE3"
FT   MOD_RES         205
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:19369195"
FT   MOD_RES         271
FT                   /note="Asymmetric dimethylarginine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9QYE3"
FT   MOD_RES         332
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:19690332"
FT   MOD_RES         337
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9QYE3"
FT   MOD_RES         446
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9QYE3"
FT   MOD_RES         447
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9QYE3"
FT   MOD_RES         608
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:19369195"
FT   MOD_RES         625
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:19690332"
FT   MOD_RES         630
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:19690332"
FT   MOD_RES         701
FT                   /note="Phosphothreonine"
FT                   /evidence="ECO:0007744|PubMed:19690332"
FT   CROSSLNK        123
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0007744|PubMed:25755297,
FT                   ECO:0007744|PubMed:28112733"
FT   CROSSLNK        164
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0007744|PubMed:28112733"
FT   CROSSLNK        620
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0007744|PubMed:28112733"
FT   CROSSLNK        634
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO1)"
FT                   /evidence="ECO:0000250|UniProtKB:Q9QYE3"
FT   CROSSLNK        833
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0007744|PubMed:25755297,
FT                   ECO:0007744|PubMed:28112733"
FT   VAR_SEQ         129..163
FT                   /note="DKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGIC -> G (in isoform
FT                   6)"
FT                   /evidence="ECO:0000303|Ref.2"
FT                   /id="VSP_009548"
FT   VAR_SEQ         129..142
FT                   /note="DKLLHWRGLSSPRS -> AQTELEDVFVYLMV (in isoform 7)"
FT                   /id="VSP_058656"
FT   VAR_SEQ         143..835
FT                   /note="Missing (in isoform 7)"
FT                   /id="VSP_058657"
FT   VAR_SEQ         212..243
FT                   /note="GIPSGLGAECPSQPPLHGIHIADNNPFNLLRI -> LHTPPFGVVPRELKMC
FT                   GSFRMEAREPLSSEKI (in isoform 3)"
FT                   /evidence="ECO:0000303|PubMed:11719382"
FT                   /id="VSP_009550"
FT   VAR_SEQ         244..835
FT                   /note="Missing (in isoform 3)"
FT                   /evidence="ECO:0000303|PubMed:11719382"
FT                   /id="VSP_009552"
FT   VAR_SEQ         745..773
FT                   /note="EYCGKVFKNCSNLTVHRRSHTGERPYKCE -> SSHTPIRRSTQRAQDVWQF
FT                   SDGSSRALKF (in isoform 2)"
FT                   /evidence="ECO:0000303|PubMed:11347906,
FT                   ECO:0000303|PubMed:11719382, ECO:0000303|PubMed:15489334"
FT                   /id="VSP_009554"
FT   VAR_SEQ         774..835
FT                   /note="Missing (in isoform 2)"
FT                   /evidence="ECO:0000303|PubMed:11347906,
FT                   ECO:0000303|PubMed:11719382, ECO:0000303|PubMed:15489334"
FT                   /id="VSP_009555"
FT   VARIANT         47
FT                   /note="T -> P (in IDPFH; de novo mutation; loss of function
FT                   in transactivation of transcription; reduces the
FT                   interaction between isoform 2 and isoform 3; disrupts the
FT                   nuclear paraspeckle distribution of isoform 2 and isoform
FT                   3; does not affect the interaction of isoform 2 with TBR1;
FT                   dbSNP:rs886037864)"
FT                   /evidence="ECO:0000269|PubMed:27453576,
FT                   ECO:0000269|PubMed:30250039"
FT                   /id="VAR_076921"
FT   VARIANT         48
FT                   /note="C -> F (in IDPFH; de novo mutation; loss of function
FT                   in transactivation of transcription; reduces the
FT                   interaction between isoform 2 and isoform 3; disrupts the
FT                   nuclear paraspeckle distribution of isoform 2 and isoform
FT                   3; does not affect the interaction of isoform 2 with TBR1;
FT                   dbSNP:rs886037865)"
FT                   /evidence="ECO:0000269|PubMed:27453576,
FT                   ECO:0000269|PubMed:30250039"
FT                   /id="VAR_076922"
FT   VARIANT         66
FT                   /note="H -> Q (in IDPFH; de novo mutation; loss of function
FT                   in transactivation of transcription; reduces the
FT                   interaction between isoform 2 and isoform 3; disrupts the
FT                   nuclear paraspeckle distribution of isoform 2 and isoform
FT                   3; does not affect the interaction of isoform 2 with TBR1;
FT                   dbSNP:rs886037866)"
FT                   /evidence="ECO:0000269|PubMed:27453576,
FT                   ECO:0000269|PubMed:30250039"
FT                   /id="VAR_076923"
FT   VARIANT         142
FT                   /note="S -> F (in a breast cancer sample; somatic
FT                   mutation)"
FT                   /evidence="ECO:0000269|PubMed:16959974"
FT                   /id="VAR_035553"
FT   CONFLICT        119
FT                   /note="G -> R (in Ref. 1; CAC17723/CAC17724/CAC17725)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        316
FT                   /note="S -> F (in Ref. 7; AAG49025)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        386
FT                   /note="F -> L (in Ref. 7; AAG49025)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        522..532
FT                   /note="Missing (in Ref. 7; AAG49025)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        648
FT                   /note="A -> T (in Ref. 1; CAC17723/CAC17724)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        653
FT                   /note="E -> D (in Ref. 7; AAG49025)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        730
FT                   /note="P -> T (in Ref. 1; CAC17723/CAC17724)"
FT                   /evidence="ECO:0000305"
FT   HELIX           739..742
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   TURN            745..747
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   STRAND          750..753
FT                   /evidence="ECO:0007829|PDB:6KI6"
FT   HELIX           754..765
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   STRAND          773..776
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   STRAND          778..781
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   HELIX           782..789
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   HELIX           790..792
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   STRAND          795..797
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   TURN            803..805
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   STRAND          808..811
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   HELIX           812..822
FT                   /evidence="ECO:0007829|PDB:6U9Q"
FT   VARIANT         Q9H165-2:47
FT                   /note="T -> P (in IDPFH, de novo mutation, loss of function
FT                   in transactivation of transcription, reduces the
FT                   interaction between isoform 2 and isoform 3, disrupts the
FT                   nuclear paraspeckle distribution of isoform 2 and isoform
FT                   3; dbSNP:rs886037864)"
FT                   /evidence="ECO:0000305"
FT                   /id="VAR_082936"
FT   VARIANT         Q9H165-2:48
FT                   /note="C -> F (in IDPFH, de novo mutation, loss of function
FT                   in transactivation of transcription, reduces the
FT                   interaction between isoform 2 and isoform 3, disrupts the
FT                   nuclear paraspeckle distribution of isoform 2 and isoform
FT                   3; dbSNP:rs886037865)"
FT                   /evidence="ECO:0000305"
FT                   /id="VAR_082937"
FT   VARIANT         Q9H165-2:66
FT                   /note="H -> Q (in IDPFH, de novo mutation, loss of function
FT                   in transactivation of transcription, reduces the
FT                   interaction between isoform 2 and isoform 3, disrupts the
FT                   nuclear paraspeckle distribution of isoform 2 and isoform
FT                   3; dbSNP:rs886037866)"
FT                   /evidence="ECO:0000305"
FT                   /id="VAR_082938"
FT   VARIANT         Q9H165-3:47
FT                   /note="T -> P (in IDPFH, de novo mutation, loss of function
FT                   transactivation of transcription, reduces the interaction
FT                   between isoform 2 and isoform 3, disrupts the nuclear
FT                   paraspeckle distribution of isoform 2 and isoform 3, does
FT                   not affect the interaction of isoform 2 with TBR1;
FT                   dbSNP:rs886037864)"
FT                   /evidence="ECO:0000305"
FT                   /id="VAR_082939"
FT   VARIANT         Q9H165-3:48
FT                   /note="C -> F (in IDPFH, de novo mutation, loss of function
FT                   in transactivation of transcription, reduces the
FT                   interaction between isoform 2 and isoform 3, disrupts the
FT                   nuclear paraspeckle distribution of isoform 2 and isoform
FT                   3, does not affect the interaction of isoform 2 with TBR1;
FT                   dbSNP:rs886037865)"
FT                   /evidence="ECO:0000305"
FT                   /id="VAR_082940"
FT   VARIANT         Q9H165-3:66
FT                   /note="H -> Q (in IDPFH, de novo mutation, loss of function
FT                   in transactivation of transcription, reduces the
FT                   interaction between isoform 2 and isoform 3, disrupts the
FT                   nuclear paraspeckle distribution of isoform 2 and isoform
FT                   3, does not affect the interaction of isoform 2 with TBR1;
FT                   dbSNP:rs886037866)"
FT                   /evidence="ECO:0000305"
FT                   /id="VAR_082941"
FT   CROSSLNK        Q9H165-6:123
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0007744|PubMed:28112733"
SQ   SEQUENCE   835 AA;  91197 MW;  D36A7D0BE6976DCF CRC64;
     MSRRKQGKPQ HLSKREFSPE PLEAILTDDE PDHGPLGAPE GDHDLLTCGQ CQMNFPLGDI
     LIFIEHKRKQ CNGSLCLEKA VDKPPSPSPI EMKKASNPVE VGIQVTPEDD DCLSTSSRGI
     CPKQEHIADK LLHWRGLSSP RSAHGALIPT PGMSAEYAPQ GICKDEPSSY TCTTCKQPFT
     SAWFLLQHAQ NTHGLRIYLE SEHGSPLTPR VGIPSGLGAE CPSQPPLHGI HIADNNPFNL
     LRIPGSVSRE ASGLAEGRFP PTPPLFSPPP RHHLDPHRIE RLGAEEMALA THHPSAFDRV
     LRLNPMAMEP PAMDFSRRLR ELAGNTSSPP LSPGRPSPMQ RLLQPFQPGS KPPFLATPPL
     PPLQSAPPPS QPPVKSKSCE FCGKTFKFQS NLVVHRRSHT GEKPYKCNLC DHACTQASKL
     KRHMKTHMHK SSPMTVKSDD GLSTASSPEP GTSDLVGSAS SALKSVVAKF KSENDPNLIP
     ENGDEEEEED DEEEEEEEEE EEEELTESER VDYGFGLSLE AARHHENSSR GAVVGVGDES
     RALPDVMQGM VLSSMQHFSE AFHQVLGEKH KRGHLAEAEG HRDTCDEDSV AGESDRIDDG
     TVNGRGCSPG ESASGGLSKK LLLGSPSSLS PFSKRIKLEK EFDLPPAAMP NTENVYSQWL
     AGYAASRQLK DPFLSFGDSR QSPFASSSEH SSENGSLRFS TPPGELDGGI SGRSGTGSGG
     STPHISGPGP GRPSSKEGRR SDTCEYCGKV FKNCSNLTVH RRSHTGERPY KCELCNYACA
     QSSKLTRHMK THGQVGKDVY KCEICKMPFS VYSTLEKHMK KWHSDRVLNN DIKTE
 
 
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