RSH1_ORYSJ
ID RSH1_ORYSJ Reviewed; 892 AA.
AC Q9AYT5; A0A0P0VX73;
DT 09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 134.
DE RecName: Full=Putative GTP diphosphokinase RSH1, chloroplastic;
DE EC=2.7.6.5;
DE AltName: Full=RelA/SpoT homolog 1;
DE Short=Os-RelA1;
DE Short=OsRSH1;
DE AltName: Full=ppGpp synthetase RSH1;
DE Flags: Precursor;
GN Name=RSH1; OrderedLocusNames=Os03g0340900, LOC_Os03g22160;
GN ORFNames=OsJ_10786;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RA Tozawa Y., Satsu H., Ito Y., Ochi K.;
RT "Rice cDNA encoding plastid ribosomal protein L11.";
RL Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: May be involved in a rapid plant ppGpp (guanosine 3'-
CC diphosphate 5'-diphosphate)-mediated response to pathogens and other
CC stresses. {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate;
CC Xref=Rhea:RHEA:22088, ChEBI:CHEBI:30616, ChEBI:CHEBI:37565,
CC ChEBI:CHEBI:142410, ChEBI:CHEBI:456215; EC=2.7.6.5;
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the RelA/SpoT family. {ECO:0000305}.
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DR EMBL; AB042935; BAB21484.1; -; mRNA.
DR EMBL; DP000009; ABF95859.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11981.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84122.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE59034.1; -; Genomic_DNA.
DR RefSeq; XP_015632055.1; XM_015776569.1.
DR AlphaFoldDB; Q9AYT5; -.
DR SMR; Q9AYT5; -.
DR STRING; 4530.OS03T0340900-01; -.
DR PaxDb; Q9AYT5; -.
DR PRIDE; Q9AYT5; -.
DR EnsemblPlants; Os03t0340900-01; Os03t0340900-01; Os03g0340900.
DR GeneID; 4332791; -.
DR Gramene; Os03t0340900-01; Os03t0340900-01; Os03g0340900.
DR KEGG; osa:4332791; -.
DR eggNOG; KOG1157; Eukaryota.
DR HOGENOM; CLU_012300_5_0_1; -.
DR InParanoid; Q9AYT5; -.
DR OMA; HSIQWFC; -.
DR OrthoDB; 505873at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q9AYT5; OS.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0008728; F:GTP diphosphokinase activity; IEA:UniProtKB-EC.
DR GO; GO:0008893; F:guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity; IEA:EnsemblPlants.
DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW.
DR GO; GO:0015969; P:guanosine tetraphosphate metabolic process; IEA:InterPro.
DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants.
DR GO; GO:0016310; P:phosphorylation; IEA:UniProtKB-KW.
DR GO; GO:0015979; P:photosynthesis; IEA:EnsemblPlants.
DR GO; GO:0009611; P:response to wounding; IEA:EnsemblPlants.
DR CDD; cd00077; HDc; 1.
DR CDD; cd05399; NT_Rel-Spo_like; 1.
DR CDD; cd01668; TGS_RSH; 1.
DR Gene3D; 3.10.20.30; -; 1.
DR Gene3D; 3.30.460.10; -; 1.
DR InterPro; IPR045865; ACT-like_dom_sf.
DR InterPro; IPR012675; Beta-grasp_dom_sf.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR043519; NT_sf.
DR InterPro; IPR007685; RelA_SpoT.
DR InterPro; IPR004095; TGS.
DR InterPro; IPR012676; TGS-like.
DR InterPro; IPR033655; TGS_RelA/SpoT.
DR Pfam; PF04607; RelA_SpoT; 1.
DR Pfam; PF02824; TGS; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00954; RelA_SpoT; 1.
DR SUPFAM; SSF55021; SSF55021; 1.
DR SUPFAM; SSF81271; SSF81271; 1.
DR SUPFAM; SSF81301; SSF81301; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS51880; TGS; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Chloroplast; GTP-binding; Kinase; Nucleotide-binding; Plastid;
KW Reference proteome; Stress response; Transferase; Transit peptide.
FT TRANSIT 1..52
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 53..892
FT /note="Putative GTP diphosphokinase RSH1, chloroplastic"
FT /id="PRO_0000429846"
FT DOMAIN 184..291
FT /note="HD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01175"
FT DOMAIN 574..637
FT /note="TGS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01228"
FT DOMAIN 809..880
FT /note="ACT"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01007"
SQ SEQUENCE 892 AA; 99143 MW; 152AFB7CD410BB33 CRC64;
MQPPTGAVSG SSSSSLECVS SCRTSWRGGG RPYECSVLSC AWNAPRALTG ALASTTAQCS
SCSHAEAGAG WRRRGQSQRS NNSLLHITWA EGINRGKFGY GSSAHSFPTG NFFKSWSTSV
DPTWRVFCYS SSESFNHISP ETLWEDLKPA ISYLQPEELN FVHDALKLAY EAHNGQKRRS
GEPFIIHPVE VARILGEHEL DWESIAAGLL HDTVEDTDMV TFERIENEFG VTVRRIVEGE
TKVSKLGKLQ CKNEGNSKQD VKAEDLRQMF LAMTEEVRVI IVKLADRLHN MRTLTHMPQH
KQYAIAMETL QVFAPLAKLL GMYRIKSELE YLSFMYMNPG DFAELKKRVE DLYKAHEQEL
EEANQILGEK IAEDQFLDLV SVETQVRSVC KELYSIYKTA LKSKSSINEI NQVAQLRIII
KPKSCNGVGP LCTAQQICYH VLGLVHGIWT PIPQAVKDYI ATPKPNGYQS LHTTVIPFLN
ESMFHLEVQI RTEDMDLIAE RGIAAHYSGR GVVSGPVRPG ISSGRNSNGK VICLNNTGFA
LRIGWLNAIR EWQEEFVGNM SSREFVDTIT RDLLGSRVFV FTPKGEIKNL PKGATVVDYA
YLIHTEIGNK MVAAKVNGNL VSPIHVLANA EVVEIIIYDK LSAKYAFQRH QQWLQHAKTR
SARHKIMKFL REQAALSAAE ITADAVNNFV ADLEDESDYE QSIPSSENKD YTFNWQKILN
SDKLSFGNKK SDCFLPVKNV SVPKVNGKHN KTVKELGIKI NGSTFRGDSF TDFIHPGVSS
SKEVLPSVDN WKAGKICAWH NTEGSSIQWL CIVCVDRKGM VAEVSSALTA CGITICSCVA
ERDKRRGIGV MLFHFEGAYE NVVSACSGVD MILGVLGWSV GCSCNPLGVL EC
