RSLE1_ORYSJ
ID RSLE1_ORYSJ Reviewed; 722 AA.
AC B9FJG3;
DT 09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
DT 13-OCT-2009, sequence version 1.
DT 03-AUG-2022, entry version 84.
DE RecName: Full=Zinc finger BED domain-containing protein RICESLEEPER 1;
DE AltName: Full=Transposase-like protein RICESLEEPER 1;
GN OrderedLocusNames=Os05g0239150, LOC_Os05g14940;
GN ORFNames=OJ1122_B08, OsJ_17746;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=23067104; DOI=10.1186/1471-2229-12-192;
RA Knip M., de Pater S., Hooykaas P.J.;
RT "The SLEEPER genes: a transposase-derived angiosperm-specific gene
RT family.";
RL BMC Plant Biol. 12:192-192(2012).
CC -!- FUNCTION: Transposase-like protein that is essential for plant growth
CC and development. May regulate global gene expression by recruiting
CC other cellular factors. {ECO:0000269|PubMed:23067104}.
CC -!- SUBUNIT: Homodimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- DISRUPTION PHENOTYPE: Reduced plant size and amount of seeds.
CC {ECO:0000269|PubMed:23067104}.
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DR EMBL; AC105768; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP008211; BAH93016.1; -; Genomic_DNA.
DR EMBL; AP014961; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM000142; EEE62941.1; -; Genomic_DNA.
DR RefSeq; XP_015637520.1; XM_015782034.1.
DR AlphaFoldDB; B9FJG3; -.
DR BioGRID; 1212658; 1.
DR iPTMnet; B9FJG3; -.
DR PaxDb; B9FJG3; -.
DR PRIDE; B9FJG3; -.
DR GeneID; 9267589; -.
DR KEGG; osa:9267589; -.
DR InParanoid; B9FJG3; -.
DR OrthoDB; 223749at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000007752; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; B9FJG3; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; IMP:UniProtKB.
DR InterPro; IPR045259; DAYSLEEPER-like.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR23272; PTHR23272; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF14372; DUF4413; 1.
DR SUPFAM; SSF53098; SSF53098; 1.
DR SUPFAM; SSF57667; SSF57667; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 3: Inferred from homology;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..722
FT /note="Zinc finger BED domain-containing protein
FT RICESLEEPER 1"
FT /id="PRO_0000429562"
FT ZN_FING 66..126
FT /note="BED-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT REGION 572..592
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 617..702
FT /note="HATC (Hobo-Ac-Tam3) domain"
FT COMPBIAS 578..592
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 89
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 92
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 113
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 119
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
SQ SEQUENCE 722 AA; 80838 MW; 6A0E4AFA232A95BD CRC64;
MAEETSNDNL VVQGNEIVPS NGEALAEEVQ GDELVLAEDL IQGDEVQGNE LVSAEMSIPP
TSRRRRKKSL VWEHFTIEAV SGGATRACCK LCKQTFAYSS GSKIAGTSHL KRHITLGSCP
KIKNQEHKLL LTPAGGTDND GEGTVERPSK RRYRYTGYAN AAFDQERSCS YLAKMIILHD
YPLHIVQQPA FTTFIDSLQP RFRVVDVETM EWEVYAVYQK EKENLMQAFN TMPGRISLAI
GLWTTSQTLG YVSLAGQFID SEWKMHRRML NFMMVSSPHS ENALSEAIST SLSDWNMKDK
LFTITLDNDC SSHDIYSANL RDYLSNKNNL MLKGQLFVVR CYAHILNAVA QDVIASIHGV
IYNIRESIKF IKASPSCEEK FAEIALQLEI PSTKTLCLDV TTQWNTTYLM LLAALDYKQA
FSTLETSDDN YNEAPSAEDW KKVEAACNYL KLLYDSAHSI MAAANPTSNL FFHEAWKLQL
ELSNATGRED PVFSSIAKDM HERFDKYWKD CNLVLAIAVV MDPRFKMKLV EFSYSKIYGV
EAAKYVKVVD DAVHELYNEY VAQPLPLTPA YVEQGGGNNA PASENSTQAT APSTGDGLVD
FDMYLSEIAT SQPTKSELEQ YLDESLTPRI QEFDILNWWK LNTLKYPTLS KMARDILAIP
MSMVSSGNSI FSAGTGTRML DDYRSSSRPE IVEALVCAKD WLQYLPATPE APSTALVKVD
AA
